A novel composite and functional micro-nanometer particle is designed by the hydrolysis of aluminium isopropoxide on the surface of ammonium polyphosphate (APP) to prepare surface nanostructured ammonium polyphosphate (NSAPP). NSAPP is characterised by XPS, XRF, SEM, water solubility tests, and TGA. Results indicate that nanosized aluminium hydroxide is deposited on the surface of NSAPP, which enhanced its water resistance and thermostability. Then, APP and NSAPP coupled with dipentaerythritol (DPER) is used for the flame retardant of polypropylene (PP). The limiting oxygen index (LOI) value of the PP/DPER/NSAPP composite is higher than that of PP/DPER/APP. Besides, the UL 94 vertical burning test of PP/DPER/NSAPP composites can reach the V-0 rating easily. According to the study of the combustion behaviour of FR-PP composites, NSAPP contributes to form a dense and multi-layered char in the combustion process. Thus, such an intumescent char with a ceramic-like, continuous, and dense structure over the PP matrix protects the underlying matrix and enhances the thermal stability of the condensed phase, thereby improving the flame retardant performance of FR-PP.