Transcription of both chromosomal and extrachromosomally introduced nifS was regulated (up-expressed) by oxygen or by supplemental iron conditions. This up-expression was not observed in a fur mutant strain background or when an iron chelator was added. Iron-bound Fur (but not apo-Fur) recognized the nifS promoter, and Fur bound significantly farther upstream (؊155 bp to ؊190 bp and ؊210 to ؊240 bp) in the promoter than documented Helicobacter pylori Fur binding regions. This binding was stronger than Fur recognition of the flgE or napA promoter and includes a Fur recognition sequence common to the H. pylori pfr and sodB upstream areas. Studies of Fur-regulated genes in H. pylori have indicated that apo-Fur acts as a repressor, but our results demonstrate that iron-bound Fur activates (nifS) transcription.The human gastric pathogen Helicobacter pylori is well adapted for colonizing a unique niche, the stomach mucosa (3). In the mucosa it is subject to severe oxidative stress from the oxidative burst of the host immune system, which results in production of a variety of reactive oxygen intermediates (ROI) that damage macromolecules of the bacterium (21). Due to the Fenton reaction, the ROI are especially a problem in the presence of excess free intracellular iron (7). Considering the persistent nature of H. pylori, it is not surprising that the pathogen has a repertoire of enzymes involved in detoxification of the oxidative agents or in repairing the oxidized macromolecules in the cell (1,17,18,22,24).Although combating oxidative stress is a key to H. pylori survival, we know little about regulation of expression of the specific genes involved. To aid in understanding the overall oxygen stress-modulated gene expression in H. pylori, we compared the global gene expression of H. pylori grown at 2% versus 12% oxygen by using a microarray approach. Preliminary results from these studies showed an up-expression of expected genes, such as thioredoxin reductase, thioredoxin, superoxide dismutase (SOD), and thiol peroxidase, all enzymes known to be directly involved in combating oxidative stress. In addition, among the other highly up-regulated genes was one encoding the Fe-S cluster synthesis protein NifS. We observed an approximately fivefold up-regulation of the nifSnifU operon (hp0220 and hp0221) after a 2-h shift from 2% to 12% O 2 (Abstr. 105th Gen. Meet. Am. Soc. Microbiol., abstr. K-063, 2005). NifS belongs to the crucial IscS family of proteins, which is involved in Fe-S cluster formation (12). The NifS proteins provide sulfur donation via an L-cysteine desulfurase activity. The cluster maturation proteins are usually considered to be essential "housekeeping" proteins, as nearly all organisms have multiple proteins that require Fe-S clusters for their function. Thus, inactivation of the H. pylori nifS-nifU operon (hp0220 and hp0221) was previously shown to be lethal to the bacterium (12, 13).In this study we performed promoter-reporter gene fusions to determine the regulation of the nifS-nifU operon under condit...