e Streptococcus pneumoniae colonizes the nasopharyngeal mucus in healthy people and causes otitis media, pneumonia, bacteremia, and meningitis. In this study, we analyzed an S. pneumoniae strain that caused 7 repeated pneumonia episodes in an 80-month-old patient with cerebral palsy during a period of 25 months. A total of 10 S. pneumoniae strains were obtained from sputum samples, and serotype 6B was isolated from samples from the first 5 episodes, whereas serotype 6A was isolated from samples from the last 2. Whole-genome sequencing showed clonality of the 10 isolates with 10 single nucleotide polymorphisms (SNPs) in the genomes. Among these SNPs, one single point mutation in the wciP gene was presumed to relate to the serotype switching from 6B to 6A, and the other mutations in parC and gyrA were related to fluoroquinolone resistance. These results suggested that an S. pneumoniae strain, which asymptomatically colonized the patient's nasopharynx or was horizontally transmitted from an asymptomatic carrier, caused the repeated pneumonia events. Phenotypic variations in the capsule type and antimicrobial susceptibility occurred during the carrier state. Hyporesponsiveness to serotypes 6B and 6A of S. pneumoniae was found even after vaccination with the 7-valent pneumococcal conjugate vaccine and the 23-valent pneumococcal polysaccharide vaccine. After an additional vaccination with the 13-valent pneumococcal conjugate vaccine, opsonic activities for both serotypes 6A and 6B significantly increased and are expected to prevent relapse by the same strain.
Streptococcus pneumoniae is the etiologic agent of several bacterial diseases, such as otitis media, pneumonia, bacteremia, and meningitis (1-3), and it can asymptomatically colonize a child's nasopharynx for months (4). Colonization by S. pneumoniae is a prerequisite for various types of pneumococcal diseases and the source of transmission of the bacterium between people (5, 6). In Japan, approximately 80% of 3-year-old children were colonized by this bacterium, which may cause pneumococcal diseases, at least once (7).Since 2000, the widespread use of 7-and 13-valent pneumococcal conjugate vaccines (PCV7 and PCV13, respectively) has reduced the incidence of pneumococcal infections (8-11) and the colonization rate of the vaccine serotypes but has not affected the overall colonization (12-15). In Japan, PCV7 was introduced in 2010 and was replaced by PCV13 in November 2013. After 2011, invasive pneumococcal disease (IPD) caused by S. pneumoniae isolates belonging to serotypes included in the PCV7 decreased (16). However, some unusual vaccine failures and/or breakthrough infection cases were reported together with the hyporesponsiveness to one or several serotypes (17).Since 2011, we have observed repeated pneumococcal pneumonia episodes in a child who has an underlying disease. Although vaccinations with PCV7 were performed, an additional 6 pneumococcal pneumonia infections occurred during the following 24 months. In this longitudinal study, we analyzed 10 S. pneu...