The molecular weights (Mp) of @-amylase inhibitors (dIs)Jom 18 ( A h ) bean cultivars estimated by Superose 12 gewltration chromatography were 22-62% smaller than those determined by Sephadex G-100 gel filtration and by polyacFylamide gel electrophoresis (PAGE) methods. dull-4 from WKB cultivar 858B was purified and the Mr was shown to be 51.0 kDa based on Sephadex G-I00 gel filtration chromatography and by PAGE. A M, for d I -4 of 56.714 kDa was determined by laser-assisted time-of-flight mass spectrometry and appears to be the true M, of the mature glycosylated active d I -4 . The results show that Superose 12 gel filtration chromatography is not usefulfor M, determination of some proteins. Sodium dodecyl sulfate electrophoresis (SDS-PAGE) showed that the 56.7 kDa &I-4 molecule dissociated into 45.0, 33.6, 15.2 and 12.4 kDa submolecules, with only the two small subunits, a and fl present at high SDS concentration. This provides evidence that the d I -4 molecules composition is a&. structue/fi.mction relationships have been reviewed in detail (Ho et al. 1994). Bean aAIs reported so far contain carbohydrate and at least two or more subunits. White kidney bean (WKB 858A and WKB 858B) aAIs, of M,s 40.0 and 20.0 kDa, respectively, were reported to be composed of two types of subunits (a-and, p-;Ho and Whitaker 1993a). aAI-4 with a reported M, of 20.0 kDa determined by FPLC Superose 12 gel filtration chromatography, is the smallest bean aAI reported so far. The cDNA-determined sequence gave a M, of 24.952 kDa for aAI-4 (unglycosylated), which was shown to be the half molecule (Lee and Whitaker, unpublished data). Therefore, it became important for us to reexamine the M, of aAI-4, as well as its subunit structure. In this paper, we report results on the molecular weight and subunit structure of mature active aAI-4 (Genbank Accession No. U84390) by several methods.
MATERIALS AND METHODS
MaterialsWhite kidney bean (Phaseolus vulgaris) WKB No. 843, 844, 846, 852, 853, 854, 855,858B, 859,866 and 867 (the first two digits indicate year grown and the third the plot number); black bean (BB; P. vulgaris) cultivar T39; and red kidney bean (RKB; P. vulgaris) cultivar RKB were obtained from the Department of Agronomy and Range Science, U.C. Davis seed repository. Red kidney bean (RKB; bin 61 10) and black bean (BB; unspecified cultivar) were obtained from a Davis grocery store. Porcine pancreatic a-amylase (type 1-A; DFP treated, 2x crystallized), DEAE-cellulose and CM-cellulose were from Sigma Chemical Co., St. Louis, MO. Sephadex G-100 and Superose 12 were from Pharmacia LKB Biotechnology, Pleasant Hill, CA. All other reagents were reagent grade.
MethodsInhibitory Activity. Activity of the inhibitor against porcine pancreatic a-amylase (EC 3.2.1.1) was determined by the method of Bernfeld (1955) with modification. The substrate was 1% NaBH,-reduced starch (Strumeyer 1967) in 0.04 M potassium phosphate buffer, pH 6.9, containing 0.05 M NaC1. A mixture of porcine pancreatic a-amylase solution (1 x lo-' M.0.1 mL), and inhibitor...