Despite large cell-to-cell variations in the concentrations of individual signaling proteins, cells transmit signals correctly. This phenomenon raises the question of what signaling systems do to prevent a predicted high failure rate. Here we combine quantitative modeling, RNA interference, and targeted selective reaction monitoring (SRM) mass spectrometry, and we show for the ubiquitous and fundamental calcium signaling system that cells monitor cytosolic and endoplasmic reticulum (ER) Ca 2+ levels and adjust in parallel the concentrations of the store-operated Ca 2+ influx mediator stromal interaction molecule (STIM), the plasma membrane Ca 2+ pump plasma membrane Ca-ATPase (PMCA), and the ER Ca 2+ pump sarco/ER Ca 2+ -ATPase (SERCA). Model calculations show that this combined parallel regulation in protein expression levels effectively stabilizes basal cytosolic and ER Ca 2+ levels and preserves receptor signaling. Our results demonstrate that, rather than directly controlling the relative level of signaling proteins in a forward regulation strategy, cells prevent transmission failure by sensing the state of the signaling pathway and using multiple parallel adaptive feedbacks.absolute quantification of calcium signaling proteins | targeted proteomics | compensation mechanisms in signal transduction networks | cell signaling | protein abundance profiling R ecent studies in mammalian cells and lower eukaryotes showed a significant variation in the expression level of individual proteins between genetically identical cells (1, 2). These variations-often exceeding a factor of 2-likely reflect noise in transcription, mRNA turnover, translation, and protein degradation. This cell-to-cell variability creates a fundamental problem for signal transduction because even small differences in the relative levels of signaling components along a pathway lead to a processive degradation of signal transmission and failed physiological responses. However, cells typically manage to transmit signals correctly, overcoming protein expression variations by unknown mechanisms.Ca 2+ signals regulate fundamental eukaryotic processes that range from secretion, muscle contraction, and memory formation to activation and differentiation of immune cells (3, 4). Our detailed knowledge of the Ca 2+ signaling system makes this pathway ideally suited to address the puzzling question of how signal transmission processes can tolerate large variations in the expression level of the underlying signaling components. We hypothesized that additional control principles must exist to explain how the otherwise well-understood Ca 2+ signaling system avoids failure and copes with large cell-to-cell variations in protein expression. To keep cells in a signaling-competent state, the Ca 2+ signaling system employs a system of pumps and channels to tightly balance Ca 2+ fluxes across the endoplasmic reticulum (ER) and plasma membrane (PM). The highly coordinated regulation of calcium homeostasis raises the questions of whether the pumps and channels are alway...