Carbon dioxide (CO2) is a major greenhouse gas in the atmosphere and has large impacts on climate change. Its fossil fuel (CO2ff) and biogenic (CO2bio) sources are well investigated, while CO2 emissions from human respiration (CO2hr), a subset of CO2bio, have received less attention. Especially as a source of carbon emissions in densely populated megacities, the role of CO2hr emissions in the carbon cycles was largely neglected. Here we fully characterize the respiratory CO2 emission rates (CERs) of Chinese people for the first time. Using the example of the megacity Beijing in China, we estimate the CO2hr emissions and present a method for quantifying its fraction in the atmospheric CO2 based on radiocarbon (14C) measurements and inventory data sets. The results show that males and females have similar age trends in CERs, but the gender difference is significant, especially between the ages of 20 and 60, the average CERs was 33% higher for males than for females (P < 0.05). The CO2hr emissions were about 22.2 ± 0.6 kt CO2 per day, which was equivalent to 7.5% of daily CO2ff emissions in winter. The proportion is likely to be twice in summer due to the seasonal fluctuations of fossil fuel emissions. More importantly, the respiratory emissions could increase atmospheric CO2 concentration by about 2 ppm, accounting for 14% ± 6% of average CO2bio concentration in winter. This study highlights the importance of human respiration in carbon emissions in megacities and has implications for a better understanding of the regional carbon budget.