To investigate mechanisms for increased malignant properties in malignant melanomas by ganglioside GD3, enzymemediated activation of radical sources and subsequent mass spectrometry were performed using an anti-GD3 antibody and GD3-positive (GD3؉) and GD3-negative (GD3-) melanoma cell lines. Neogenin, defined as a GD3-neighbored molecule, was largely localized in lipid/rafts in GD3؉ cells. Silencing of neogenin resulted in the reduction of cell growth and invasion activity. Physical association between GD3 and neogenin was demonstrated by immunoblotting of the immunoprecipitates with anti-neogenin antibody from GD3؉ cell lysates. The intracytoplasmic domain of neogenin (Ne-ICD) was detected in GD3؉ cells at higher levels than in GD3؊ cells when cells were treated by a proteasome inhibitor but not when simultaneously treated with a ␥-secretase inhibitor. Exogenous GD3 also induced increased Ne-ICD in GD3؊ cells. Overexpression of Ne-ICD in GD3؊ cells resulted in the increased cell growth and invasion activity, suggesting that Ne-ICD plays a role as a transcriptional factor to drive malignant properties of melanomas after cleavage with ␥-secretase. ␥-Secretase was found in lipid/rafts in GD3؉ cells. Accordingly, immunocyto-staining revealed that GD3, neogenin, and ␥-secretase were co-localized at the leading edge of GD3؉ cells. All these results suggested that GD3 recruits ␥-secretase to lipid/rafts, allowing efficient cleavage of neogenin. ChIP-sequencing was performed to identify candidates of target genes of Ne-ICD. Some of them actually showed increased expression after expression of Ne-ICD, probably exerting malignant phenotypes of melanomas under GD3 expression.It has been long known that malignant transformation of cells brings about changes in the carbohydrate structures in the glycoproteins and glycolipids expressed on the cell surface (1).In particular, there have been a number of reports on the expression of unique glycosphingolipids in neuroectoderm-derived cancer cells (2), osteosarcomas (3, 4), small lung cancer cells (5, 6), and T-cell leukemia cells (7-9). Some of them have been utilized in the clinical field as tumor markers (10) or target molecules of antibody therapy (11).Because ganglioside GD3 was reported to be neo-antigen in melanomas (12-14), it has attracted the interests of researchers in cancer immunology field, and its expression in normal and cancer tissues has been analyzed (15). The effects of anti-GD3 antibody therapy in melanomas (16) and various aspects of its roles in melanomas have been also reported (17-19). These results suggest that GD3 plays important roles in the enhancement of malignant properties of melanomas (20, 21) by regulating glycolipid-enriched microdomain (GEM) 2 /rafts (22). However, precise mechanisms for GD3 function in cancers have not yet been clarified.To investigate how gangliosides are involved in the regulation of cell signaling, we have applied enzyme-mediated activation of radical sources (EMARS) method (23) to identify membrane molecules interacting wi...