“…4B) in a manner similar to that observed in fish gills 36 . In addition to the previously identified markers gene, our scRNA-seq and ST-seq data further identified massive cell cycle-, proliferation-, and differentiation-related genes in PEBZCs (cluster 2/6) and DEPCs (cluster 0) [including several markers of stem cells such as DEK 37,38 , Serine/arginine-rich splicing factor 1 39 , protein hedgehog 40,41 , nesprin-1 42 , protein crumbs-like 2 43,44 , repulsive guidance molecule A 45 , G1/S-specific cyclin-E gene 46,47 , calcium/calmodulin-dependent protein kinase type II 48,49 , prospero homeobox protein 1 50 , Neuroglian 51 , SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 52,53 , bone morphogenic protein type 2 receptor 54 , and protein strawberry notch homolog 1 55 ] (Supplementary Table 2). Using an expression atlas of stem cells and bacteriocyte lineages, we then characterized the bacteriocyte development trajectory using three different models: pseudo-time analysis by Monocle (Fig.…”