Neutrophils are well characterized as mediators of peripheral tissue damage in lupus, but it remains unclear whether they influence loss of self-tolerance in the adaptive immune compartment. Lupus neutrophils produce elevated levels of factors known to fuel autoantibody production, including interleukin-6 and B cell survival factors, but also reactive oxygen intermediates, which can suppress lymphocyte proliferation. In order to assess whether neutrophils directly influence the progression of auto-reactivity in secondary lymphoid organs (SLO), we characterized the localization and cell-cell contacts of splenic neutrophils at several stages in the progression of disease in the NZB/W murine model of lupus. Neutrophils accumulate in SLO over the course of lupus progression, preferentially localizing near T lymphocytes early in disease and B cells with advanced disease. RNA sequencing reveals that the splenic neutrophil transcriptional program changes significantly over the course of disease, with neutrophil expression of anti-inflammatory mediators peaking during early- and mid-stage disease, and evidence of neutrophil activation with advanced disease. To assess whether neutrophils exert predominantly protective or deleterious effects on loss of B cell self-tolerance in vivo, we depleted neutrophils at different stages of disease. Neutrophil depletion early in lupus resulted in a striking acceleration in the onset of renal disease, SLO germinal center formation, and auto-reactive plasma cell production. In contrast, neutrophil depletion with more advanced disease did not alter SLE progression. These results demonstrate a surprising temporal and context dependent role for neutrophils in restraining auto-reactive B cell activation in lupus.