Chitosan nanoparticles (CSNPs) have been recently used for various applications in aquaculture, especially as drug carriers. The aim of this study was to synthesise and investigate a superlative method of CSNP synthesis for application in aquaculture through aquaculture-based toxicology screening methods. Two different methods were analysed: the first a direct ionic gelation method (A) and the other involving a low-molecular-weight chitosan microparticle intermediate method (B). Dynamic light scattering characterisation revealed that the CSNP particle sizes were 192.7 ± 11.8 and 22.9 nm from methods A and B, respectively. The LC 50 values for brine shrimp toxicitywerefoundtobe1.51and0.02pptin24hfor methodsAandB,respectively.Acutetoxicity studies in Litopenaeus vannamei rendered LC 50 values of 3235.94 and 2884.03 ppt in 24 h for methods A and B, respectively. Zebrafish toxicity studies revealed mortality rates of 21.67% and 55% at 20 mg/L concentration for methods A and B, respectively, with an increased expression of intracellular reactive oxygen species in method B. From these findings, it can be concluded that a comparatively reduced toxicity of CSNPs derived from ionic gelation method makes it more appropriate for application in aquaculture. 1 | INTRODUCTION Chitosan (CS) is a biodegradable compound, obtained from the deacetylation of N-acetylglucosamine subunits of the polysaccharide chitin; CS is widely used as a drug-delivery agent [1], and is applied in various fields such as the cosmetics, biomedical, and food industries, including aquaculture [2]. Its biocompatibility renders an enhanced membrane permeability property, which therefore makes it a propitious drug-delivery agent, principally in the form of nanoparticles (NPs) [3]. Chitosan nanoparticles (CSNPs) are favourable drug carriers, especially for DNA vaccines and supplements, such as RNA nucleotides, vitamin C, hormones, etc. Oral administration of CSNPs has been shown to possess immune-inducing activities in the field of aquaculture [4]. CSNPs have also been efficiently used in the form of films for preserving the fillets of sardine, croaker, salmon and trout [5-8]. In aquaculture, CSNPs has also been used to deliver biological molecules and vaccines, orally or parenterally, in several organisms, specifically in Clarias magur, Litopenaeus vannamei, Labeo rohita, Solea senegalensis, and Lates calcarifer [3,9-12]. CSNPs are prepared by several methods, the most widely used being ionotropic gelation, polyelectrolyte complex, emulsification solvent diffusion, reverse micellar method, and microemulsion [13]. Among these methods, ionic or ionotropic gelation is most commonly used due to its low-energy requirement and the non-toxic nature of the raw materials utilised in the synthesis process [14]. The synthesis process involves cross-linking of CS to poly-anionic sodium tripolyphosphate (NaTPP) to form CS-TPP NPs. Ionic gelation synthesis yields CSNPs within a size range of 100-300 nm, dependent on several factors like temperature, pH, concentration of...