Atmospheric concentrations of carbon dioxide (CO 2 ), methane (CH 4 ), and nitrous oxide (N 2 O) have increased by 47%, 160%, and 22% compared to pre-industrial levels, respectively, and are largely responsible for increasing trends in global temperatures (Burke et al., 2018). While CO 2 is the more abundant greenhouse gas, CH 4 and N 2 O can contribute disproportionately to radiative forcing due to their powerful warming potentials (~25 and 300 times more potent than CO 2 on a weight/weight basis over a 100-year time-frame) (Stocker et al., 2013). The open ocean plays a pivotal role in regulating atmospheric greenhouse gas dynamics, usually acting as a sink of CO 2 (−2400 Tg CO 2 y −1 ; Le Quéré et al., 2018) and a source of CH 4 (14 Tg y −1 ; Saunois et al., 2020) and N 2 O (3.4 Tg y −1 ; Tian et al., 2020). However, substantial uncertainties remain in the respective CO 2 , CH 4 and N 2 O budgets due to variation in regional environmental factors (e.g., upwelling regions, oxygen depletion zones, cryptic sources, and processes) that can influence GHG dynamics. Additionally, stronger benthic-pelagic coupling signals in shallower waters and terrestrial carbon and nitrogen Abstract Methane (CH 4 ) and nitrous oxide (N 2 O) dynamics in coastal coral reef areas are poorly understood. We measured dissolved carbon dioxide (CO 2 ) and CH 4 (with δ 13 C-CO 2 and δ 13 C-CH 4 isotope fractions) and N 2 O in the Great Barrier Reef (GBR) to determine spatial distributions and emissions. CO 2 (379-589 μatm) was oversaturated due to calcification and riverine sources, as indicated by depleted δ 13 C-CO 2 values. CH 4 (1.5-13.5 nM) was also oversaturated from nearshore biogenic sources indicated by depleted δ 13 C-CH 4 and probable offshore aerobic production. N 2 O (5.5-6.6 nM) was generally undersaturated, with uptake highest near the coast. Daily CO 2 emissions were 5826 ± 1191 tonnes, with CO 2 equivalent ( eq ) N 2 O uptake (191 ± 44 tonnes) offsetting 3.3% of CO 2 or 89% of CH 4eq (214 ± 45 tonnes) emissions based on 20-year global warming potentials. The GBR was a slight CO 2 and CH 4 source and N 2 O sink during our study. However, further work is required to constrain diurnal, seasonal, and spatial dynamics.
Plain Language SummaryThe oceans absorb carbon dioxide from the atmosphere but can emit the more potent greenhouse gases of methane and nitrous oxide. Large uncertainties remain in oceanic greenhouse gas budgets due to variation in regional emissions from environmental factors such as upwelling, oxygen depletion, continental nutrient inputs and sedimentary processes in coastal areas. Here, we measured dissolved carbon dioxide, methane, and nitrous oxide in the Great Barrier Reef lagoon to characterize spatial distributions, drivers, and emissions. The lagoon was a minor source of carbon dioxide and methane to the atmosphere, with higher emissions near the coast. The primary carbon dioxide source was calcification, where carbon dioxide is produced when organisms build calcium carbonate skeletons. Methane concentrati...