Aim
Apomixis, i.e. asexual reproduction via seeds, occurs in many plant taxa of diverse phylogenetic origins and has resulted in a high abundance and wide distribution of some groups. When and where apomicts arose and how their evolution is linked to their sexual ancestors is poorly understood. We aimed at detecting phylogeographical patterns in Rubus ulmifolius–R. sanctus agg., a diploid sexual species aggregate from Rubus series Discolores (Rosaceae), and asked where and when its polyploid apomictic descendants originated.
Location
Europe and adjacent regions (Caucasus, Macaronesia, Morocco).
Methods
Next‐generation sequencing of 10 nuclear microsatellite loci, Sanger sequencing of two plastid loci and ecological niche modelling.
Results
The data reveal strong, continental‐scale genetic structuring within Rubus ulmifolius–R. sanctus agg. Geographical patterns of genetic diversity and ecological niche models indicate its survival mainly on the Iberian Peninsula and in Morocco during the Last Glacial Maximum, as well as population bottlenecks in the eastern Mediterranean and the Caucasus, whereas low allelic diversity in north‐western Europe stems from post‐glacial re‐colonization from southern refugia. The distribution of alleles among diploids and polyploids indicates that the first allopolyploidization events occurred prior to the last glaciation, but also reflects post‐glacial gene flow from diploids to polyploids.
Main conclusions
Polyploid apomicts both preserve ancestral alleles lost in their diploid ancestors because of ice‐age bottlenecks and harbour also derived, i.e. younger, alleles obtained from diploid taxa via recent gene flow. Diversification of apomicts as a result of the diploid's genetic deterioration is hypothesized. Then, geographical parthenogenesis in Rubus could also be explained by genetic diversity patterns in the diploid, sexual ancestor.