New microsatellite markers isolated from mungbean (<i>Vigna radiata</i> (L.) Wilczek)

Somta, Prakit; Musch, Warunee; Kongsamai, Buppa; Chanprame, Sontichai; Nakasathien, Sutkhet; Toojinda, Theerayut; Sorajjapinun, Worawit; Seehalak, Worapa; Tragoonrung, Somvong; Srinives, Peerasak

doi:10.1111/j.1755-0998.2008.02219.x

Cited by 72 publications

(49 citation statements)

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“…KPS1 and V4718 were screened for DNA polymorphism using 753 primer pairs of simple sequence repeat (SSR) markers [433 from mungbean (Gwag et al, 2006;Tangphatsornruang et al, 2009;Somta et al, 2008;Seehalak et al, 2009;Somta et al, 2009) et al, 2001), and 86 from common bean (Phaseolus vulgaris L.) (Gaitán-Solís et al, 2002;Blair et al, 2003;Guerra-Sanz, 2004;Buso et al, 2006)]. Polymorphic markers were then used to analyze the F2 population.…”

Section: Ssr Marker Analysismentioning

confidence: 99%

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QTLs CONTROLLING SEED WEIGHT AND DAYS TO FLOWERING IN MUNGBEAN [Vigna radiata (L.) Wilczek], THEIR CONSERVATION IN AZUKI BEAN [V. angularis (Ohwi) Ohwi & Ohashi] AND RICE BEAN [V. umbellata (Thunb.) Ohwi & Ohashi]

et al. 2015

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Section: Ssr Marker Analysismentioning

confidence: 99%

“…Polymorphic markers were then used to analyze the F2 population. DNA marker analysis was carried out as per Somta et al (2008).…”

Section: Ssr Marker Analysismentioning

confidence: 99%

QTLs CONTROLLING SEED WEIGHT AND DAYS TO FLOWERING IN MUNGBEAN [Vigna radiata (L.) Wilczek], THEIR CONSERVATION IN AZUKI BEAN [V. angularis (Ohwi) Ohwi & Ohashi] AND RICE BEAN [V. umbellata (Thunb.) Ohwi & Ohashi]

et al. 2015

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“…Due to its protein-rich edible seeds, its ability to fix nitrogen, drought tolerance, and early maturity, it is widely planted in various cropping systems (Tangphatsornruang et al, 2009). Mungbean, which provides two of the most important and inexpensive sources of dietary protein to the people of Asia and Africa, is a tropical legume species (Somta et al, 2008). Mungbean sprouts are a common food in some Asian countries and are an excellent source of protein, calcium, and vitamin C. It is commonly used as a vegetable accompaniment to a meal (Rehman, Ali, Saleem, & Tadesse, 2010).…”

Section: Introductionmentioning

confidence: 99%

Comparison of Population Genetic Structures between Asian and American Mungbean Accessions Using SSR Markers

Wang

Kwon

Park

2012

JAS

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The purpose of this study was to evaluate the genetic diversity and population structure of 65 mungbean accessions collected from East and Southeast Asia, the United States and Guatemala using 15 simple sequence repeat (SSR) markers. In total, 47 alleles were detected, the number of the alleles per locus range from two to six, with an average of 3.13. The mean major allele frequency (MAF), expected heterozygosity (H E ), and polymorphic information content (PIC) of the 15 SSR loci were 0.76, 0.05, and 0.28, respectively. Of the 47 alleles, 17 (36.2%) were common, with a frequency of 0.05-0.5; 16 (34.0%) were rare (frequency < 0.05) and 14 (29.8%) were abundant (frequency > 0.5). On the basis of the UPGMA dendrogram, most of the accessions were clustered into two main groups. The first group (Group I) included seven accessions and the second comprised 58 accessions, which were further divided into four subgroups. Four subpopulations were detected by model-based structure analysis. Fifty-five accessions (84.6%) showed a clear relation to each cluster based on their inferred ancestry value (>75%), while the remaining 10 accessions (15.4%) were categorized as admixtures. Mungbean accessions from US distributed to almost all clusters and 2 accessions shared genetic constituents showing it derived from mixed ancestry with Asean accessions. These results could be useful in identifying mungbean germplasms and facilitating their improvement programs.

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“…SSR markers are important owing to their co-dominant inheritance, relative abundance, high reproducibility, polymorphism, and simplicity of genotyping (Tautz & Renz, 1984;Varshney et al, 2005). The number of genomewide polymorphic SSR markers is limited for mungbean (Kumar et al, 2004;Somta et al, 2008;Tangphatsornruang et al, 2009). Development of SSRs based on SSR-enriched libraries, cloning, and sequencing is expensive and time-consuming (Yu et al, 2009).…”

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confidence: 99%

Development of new gene-specific markers associated with salt tolerance for mungbean (Vigna radiata L. Wilczek)

Sehrawat

Bhat

Kaga

et al. 2014

Span. j. agric. res.

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Thirty eight novel microsatellite markers (SSRs) specific to candidate genes involved in salt tolerance were developed for detection of genetic variations in 12 mungbean genotypes variably adapted to salt stress. A 100 out of 124 putative alleles were found polymorphic between wild and cultivated genotypes (inter-specific, 80.65%), 65 were within cultivars of mungbean (intra-specific, 52.42%) and 52 were within wild genotypes (inter-specific, 41.94%). The polymorphism varied from 86.84% to 100%, while the number of polymorphic alleles ranged from 1 to 4 with an average value of 2.63 per locus. The polymorphism information content (PIC) values ranged from 0.326 to 0.875 with an average value of 0.671, which shows their effectiveness in genetic analysis. Cluster analysis resulted in the distribution of salt tolerant and susceptible genotypes in separate groups which revealed the presence of inherent variations among mungbean cultivars. These variations were explored effectively for SSR markers studies. The developed SSR markers may help along with already available markers to execute further research on mungbean. The markers may be coupled with specific loci linked with salt tolerance. The developed markers will help to identify the QTLs (quantitative trait loci) or other important genes. These markers can also be utilized for testing the purity of hybrids or diversity assessment of Vigna species for important agronomic traits.

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New microsatellite markers isolated from mungbean (Vigna radiata (L.) Wilczek)

Cited by 72 publications

References 5 publications

QTLs CONTROLLING SEED WEIGHT AND DAYS TO FLOWERING IN MUNGBEAN [Vigna radiata (L.) Wilczek], THEIR CONSERVATION IN AZUKI BEAN [V. angularis (Ohwi) Ohwi & Ohashi] AND RICE BEAN [V. umbellata (Thunb.) Ohwi & Ohashi]

QTLs CONTROLLING SEED WEIGHT AND DAYS TO FLOWERING IN MUNGBEAN [Vigna radiata (L.) Wilczek], THEIR CONSERVATION IN AZUKI BEAN [V. angularis (Ohwi) Ohwi & Ohashi] AND RICE BEAN [V. umbellata (Thunb.) Ohwi & Ohashi]

Comparison of Population Genetic Structures between Asian and American Mungbean Accessions Using SSR Markers

Development of new gene-specific markers associated with salt tolerance for mungbean (Vigna radiata L. Wilczek)

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