Quantitation of cytomegalovirus (CMV) DNA in plasma and serum by PCR is increasingly used to identify patients at risk for developing CMV disease and to monitor the efficacy of antiviral therapy. Although CMV DNA levels are generally interpreted as viral loads, the exact nature of the viral DNA in these specimens is unknown. We studied the state of CMV DNA in plasma and serum specimens obtained from three renal transplant recipients at peak viral DNA levels during primary CMV infection. For this purpose, DNA isolated from these specimens was fractionated by size, and CMV DNA levels in the resulting DNA fractions were measured by quantitative PCR targeted at large (578-bp) and small (134-bp) amplicons. These experiments showed that the molecular sizes of DNA fragments from which CMV DNA is amplified were small (<2,000 bp), indicating that CMV DNA in plasma and serum is highly fragmented. Furthermore, CMV DNA levels were consistently higher when targeted at the smaller amplicon, providing additional evidence for the fragmentation of viral DNA. In conclusion, the first results with three patients have shown that CMV DNA in plasma and serum is highly fragmented and does not necessarily reflect the amount of infectious virus. These observations have potential consequences for understanding CMV pathogenesis and interpreting CMV DNA levels in individual patient management.Infection with cytomegalovirus (CMV) (human herpesvirus 5) is an important cause of morbidity and mortality in immunocompromised individuals, such as transplant recipients and AIDS patients. In the management of CMV infection, preemptive treatment strategies, aimed at preventing CMV disease in high-risk patients, are receiving increasing attention. For the benefit of such strategies, quantitative detection of CMV DNA in the blood compartment by PCR is increasingly used to identify patients at risk for CMV disease. In addition, measurements of viral DNA load may be important for monitoring the efficacy of antiviral treatment and predicting the development of drug resistance (3,22,27).The genome of human CMV consists of a large (about 230,000-bp) double-stranded linear DNA molecule which is encapsidated within a double protein shell and a lipid envelope (24). Most of the CMV DNA in the blood compartment is present in abortively infected polymorphonuclear leukocytes (4,12,16,26); less DNA is found in peripheral blood mononuclear cells, part of which, upon differentiation into macrophages, support viral replication (12,26,28). In addition, circulating, productively infected endothelial cells may be a source of CMV DNA (16, 18). CMV DNA can also be detected in serum and plasma, which are convenient specimens for CMV DNA load measurement (10,15,19,29). In recent years, many studies on the qualitative and quantitative detection of CMV DNA in these specimens have been reported, which generally show that levels of CMV DNA found in plasma or serum are significantly lower than those found in white blood cells (4,5,13,15,33).At present, it is unclear whether CMV ...