New Records of Xylaria Species in Korea: X. ripicola sp. nov. and X. tentaculata

Kim, Changsun; Jo, Jong Won; Kwag, Young Nam; Oh, Soon Ok; Lee, Sle gee; Sung, Gi Ho; Han, Jeon-Geon; Oh, Jeill; Shrestha, Bhushan; Kim, Sang Yong; Shin, Chang Ho; Han, Sang Kuk

doi:10.5941/myco.2016.44.1.21

Cited by 9 publications

(6 citation statements)

References 18 publications

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“…The molecular phylogeny was inferred from a combined dataset of ITS, TUB and RPB2 sequences. The sequences retrieved from open databases originated fromHsieh et al (2005),Persoh et al (2009),Hsieh et al (2010),Roensch et al (2010),Hashemi et al (2015),Kim et al (2016),Ma and Li (2018) andWendt et al (2018) (Table…”

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confidence: 99%

Three new Xylaria species (Xylariaceae, Xylariales) on fallen leaves from Hainan Tropical Rainforest National Park

X¹,

Song²,

Qu³

et al. 2022

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Three new species of Xylaria on fallen leaves in Hainan Province of China are described and illustrated, based on morphological and molecular evidence. Xylaria hedyosmicola is found on fallen leaves of Hedyosmum orientale and featured by thread-like stromata with a long sterile filiform apex. Phylogenetically, X. hedyosmicola is closely related to an undescribed Xylaria sp. from Hawaii Island, USA and morphologically similar to X. vagans. Xylaria lindericola is found on fallen leaves of Lindera robusta and characterised by its subglobose stromata and a long filiform stipe. It is phylogenetically closely related to X. sicula f. major. Xylaria polysporicola is found on fallen leaves of Polyspora hainanensis, it is distinguished by upright or prostrate stromata and ascospores sometimes with a slimy sheath or non-cellular appendages. Xylaria polysporicola is phylogenetically closely related to X. amphithele and X. ficicola. An identification key to the ten species on fallen leaves in China is given.

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confidence: 99%

Three new Xylaria species (Xylariaceae, Xylariales) on fallen leaves from Hainan Tropical Rainforest National Park

X¹,

Song²,

Qu³

et al. 2022

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“…(5'-TCCTCCGCTTATTGATATGC-3') as previously described (Cho et al 2015;Kim et al 2016;Lee et al 2000;Persoh et al 2009;Raja et al 2017). PCR reactions were performed in a total volume of 20 µl consists of 6 µl distilled water, 10 µl 2x PCR master mix (iNtRONbiotechnology, Korea), 1 µl of each 10 µM primer (0.5 µM) and 2 µl template DNA.…”

Section: Pcr Ampli Cation Of Internal Transcribed Spacer (Its) Regionmentioning

confidence: 99%

“…It is di cult to differentiate closely related species. However, molecular techniques such as polymerase chain reaction (PCR) for mushroom identi cation have proved to be fast, speci c, and sensitive, especially, inconsistent morphology and indiscrimination among species of mushrooms (Cho et al 2015;Kim et al 2016;Lee et al 2000;Persoh et al 2009;Raja et al 2017). The conserved region such as Internal Transcribed Spacer (ITS) of nuclear ribosomal DNA (rDNA) usually has been targeted because it is highly conserved among interspecies but variable between intraspecies (Raja et al 2017).…”

Section: Introductionmentioning

confidence: 99%

Diversity of Ascomycetes Mushroom in Para Rubber Plantation, Thailand

Surawut¹,

Nak-aim²,

Kunsook³

et al. 2021

Preprint

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Ascomycetes mushrooms are fungi that produce ascospores in asci and some with perithecia. Not only they have a role of decomposer in ecology but also produced some bioactive compound, anti-microbial activity, and cytotoxicity. This study aims to explore the diversity of ascomycetes mushroom species in para rubber plantations and to identify them by morphological and sequence analysis of the internal transcribed spacer (ITS) region. The results found ascomycetes mushroom consist of Trichoderma pezizoides (RP1, % identity 98.79, DQ835513.1), Daldinia eschscholtzii (RP2, % identity 100, MN310384.1), Cookeina sulcipes (RP3, % identity 98.44, KY094620.1), Cookeina garethjonesii (RP4, % identity 99.06, KY094622.1), Cookeina tricholoma (RP5, % identity 100, KY094619.1) and Xylaria terricola (RP6, % identity 88.42, MF577038.1). Most of the ascomycetes in this study have previously been described in Thailand except Xylaria terricola. Additionally, phylogenetic analysis of ascomycetes mushroom showed high genetic relatedness with reference strains. Therefore, the sequence similarity and phylogenetic analysis confirmed the identity of six ascomycetes mushroom species, and further study of bioactive compound from these mushrooms may be investigated for other applications.

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“…The Internal Transcribed Spacer (ITS) of nuclear ribosomal DNA (rDNA) is the conserved region and usually has been targeted for fungal identification due to being highly conserved inside the same species and variable among species in this region. (Kim et al, 2016;Raja et al, 2017). However, in several fungal taxa, molecular identification using ITS alone could not be certain.…”

Section: Introductionmentioning

confidence: 99%

Diversity and the Molecular Identification of Some Ascomycetes Macrofungi Found in the Para Rubber Plantation, Thailand

Surawut¹,

Nak-eiam²,

Kunsook³

et al. 2021

J Biochem Technol

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This study aims to explore the diversity and to identify some ascomycetes macrofungal species found in a para rubber plantation, analysis of the internal transcribed spacer (ITS) region and nuclear large subunit rDNA sequences (LSU) morphology by Eastern Thailand. The species identification of the collection numbers RP2, RP3, RP4, and RP5 by both ITS and LSU sequences was consistent. The RP2, RP3, RP4, and RP5 were identified as Daldinia eschscholtzii, Cookeina sulcipes, Cookeina garethjonesii, and Cookeina tricholoma, respectively. Two unidentified species, Trichoderma sp. (RP1) and Xylaria sp.(RP6) maybe require additional molecular markers other than ITS and LSU. This study suggested that macrofungal identification required a combination of morphological and molecular biology approaches for specificity and accuracy. In some fungal taxa, sequence analysis of ITS and LSU could not discriminate fungal species. Although most of the ascomycetes in this study have previously been described in Thailand, this is the first report of ascomycetes macrofungi from para rubber plantations.

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New Records of Xylaria Species in Korea: X. ripicola sp. nov. and X. tentaculata

Cited by 9 publications

References 18 publications

Three new Xylaria species (Xylariaceae, Xylariales) on fallen leaves from Hainan Tropical Rainforest National Park

Three new Xylaria species (Xylariaceae, Xylariales) on fallen leaves from Hainan Tropical Rainforest National Park

Diversity of Ascomycetes Mushroom in Para Rubber Plantation, Thailand

Diversity and the Molecular Identification of Some Ascomycetes Macrofungi Found in the Para Rubber Plantation, Thailand

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New Records of Xylaria Species in Korea: X. ripicola sp. nov. and X. tentaculata

Cited by 9 publications

References 18 publications

﻿Three new Xylaria species (Xylariaceae, Xylariales) on fallen leaves from Hainan Tropical Rainforest National Park

﻿Three new Xylaria species (Xylariaceae, Xylariales) on fallen leaves from Hainan Tropical Rainforest National Park

Diversity of Ascomycetes Mushroom in Para Rubber Plantation, Thailand

Diversity and the Molecular Identification of Some Ascomycetes Macrofungi Found in the Para Rubber Plantation, Thailand

Contact Info

Product

Resources

About

Three new Xylaria species (Xylariaceae, Xylariales) on fallen leaves from Hainan Tropical Rainforest National Park

Three new Xylaria species (Xylariaceae, Xylariales) on fallen leaves from Hainan Tropical Rainforest National Park