2018
DOI: 10.21926/obm.genet.1901065
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New Tools in Cognitive Neurobiology: Biotin-Digoxigenin Detection of Overlapping Active Neuronal Populations by Two-Color c-fos Compartment Analysis of Temporal Activity by Fluorescent in situ Hybridization (catFISH)

Abstract: Background: The method of cellular compartment analysis of temporal activity by fluorescent in situ hybridization (catFISH) is widely used in cellular and behavioral neurobiology. This technique exploits stimulus-induced expression of immediate early genes (IEGs) and allows identification of two neuronal populations activated in the brain of the same animal in response to neural or behavioral events separated by 25-30 min. The differential labeling is based on the visualization of nuclear RNA and cytoplasmic m… Show more

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(4 citation statements)
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“…In addition to Fos activity imaging, we used Fos-associated transgenic mouse approach as a proof-of-principle for long-term investigation of calcium activity in neurons specifically tagged during a cognitive episode. Currently, different IEG-based methods such as compartment analysis of temporal activity by fluorescent in-situ hybridization (catFISH) or TetTag and TRAP transgenic systems are used to label histochemically neurons that were activated during two behavioral episodes [ 25 , 32 , 33 , 35 , 36 ]. However, the catFISH technique has a limited tagging window that allows comparing populations of neurons that were activated in two episodes with only about 30 min time window [ 36 ].…”
Section: Discussionmentioning
confidence: 99%
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“…In addition to Fos activity imaging, we used Fos-associated transgenic mouse approach as a proof-of-principle for long-term investigation of calcium activity in neurons specifically tagged during a cognitive episode. Currently, different IEG-based methods such as compartment analysis of temporal activity by fluorescent in-situ hybridization (catFISH) or TetTag and TRAP transgenic systems are used to label histochemically neurons that were activated during two behavioral episodes [ 25 , 32 , 33 , 35 , 36 ]. However, the catFISH technique has a limited tagging window that allows comparing populations of neurons that were activated in two episodes with only about 30 min time window [ 36 ].…”
Section: Discussionmentioning
confidence: 99%
“…Currently, different IEG-based methods such as compartment analysis of temporal activity by fluorescent in-situ hybridization (catFISH) or TetTag and TRAP transgenic systems are used to label histochemically neurons that were activated during two behavioral episodes [ 25 , 32 , 33 , 35 , 36 ]. However, the catFISH technique has a limited tagging window that allows comparing populations of neurons that were activated in two episodes with only about 30 min time window [ 36 ]. Also, catFISH is not suitable for the investigation of the dynamic activity of labeled cells.…”
Section: Discussionmentioning
confidence: 99%
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