The partial denitrification and anammox (PDA) process has received attention for its ability to optimize treatment of wastewater containing low -N concentration. This study investigated the suitable operational condition for -N accumulation by hydrogenotrophic denitrification (HD) in operation of a lab-scale moving bed biofilm reactor, for future application in PDA process. -N accumulation was achieved by minimizing the H2 flow rate under optimized condition (i.e., 15 mL/min H2 flow rate, 40 mg-N/L influent -N, 7.0 h hydraulic retention time, and 2 L working volume). Hydrogenophaga comprised 39.2% of the bacterial abundance after -N accumulated, indicating its contribution to the -N accumulation. In addition, an intermittent H2 supply maintained the -N accumulation rate (NAR) and maximized the nitrite accumulation efficiency (NAE). A H2 supply ratio of 0.7 (i.e., ON: 7 min, OFF: 3 min) was optimal, which induced increases in NAR, NAE, and the -N removal efficiency that reached 0.07 ± 0.01 kg-N/m3/d, 64.4 ± 14.5%, and 89.2 ± 8.9%, respectively. The ratio of H2 supply rate to the -N loading rate was calculated as 4.3 in.this experiment, which may represent the optimal balance for maximization of -N accumulation by HD.