2008
DOI: 10.3233/jcm-2008-81-203
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Newton-type methods for REML estimation in genetic analysis of quantitative traits

Abstract: Robust and efficient optimization methods for variance component estimation using Restricted Maximum Likelihood (REML) models for genetic mapping of quantitative traits are considered. We show that the standard Newton-AI scheme may fail when the optimum is located at one of the constraint boundaries, and we introduce different approaches to remedy this by taking the constraints into account. We approximate the Hessian of the objective function using the average information matrix and also by using an inverse B… Show more

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“…The variance–covariance structure between family members is used to calculate the interclass correlation coefficient. This shows the heritability of the quantitative trait in question ( 26 , 27 ).…”
Section: Methods and Proceduresmentioning
confidence: 96%
“…The variance–covariance structure between family members is used to calculate the interclass correlation coefficient. This shows the heritability of the quantitative trait in question ( 26 , 27 ).…”
Section: Methods and Proceduresmentioning
confidence: 96%