Environmental context. Computational simulations are providing an increasingly useful way to isolate specific geochemical and environmental reactions and to test how important they are to the overall rate. In this review, we summarise a few ways that one can simulate a reaction and discuss each technique's overall strengths and weaknesses. Selected case studies illustrate how these techniques have helped to improve our understanding for geochemical and environmental problems.Abstract. Methods to explore reactions using computer simulation are becoming increasingly quantitative, versatile and robust. In this review, a rationale for how molecular simulation can help build better geochemical kinetics models is first given. Some common methods are summarised that geochemists use to simulate reaction mechanisms, specifically classical molecular dynamics and quantum chemical methods and their strengths and weaknesses are also discussed. Useful tools such as umbrella sampling and metadynamics that enable one to explore reactions are discussed. Several case studies wherein geochemists have used these tools to understand reaction mechanisms are presented, including water exchange and sorption on aqueous species and mineral surfaces, surface charging, crystal growth and dissolution, and electron transfer. The effect that molecular simulation has had on our understanding of geochemical reactivity is highlighted in each case. In the future, it is anticipated that molecular simulation of geochemical reaction mechanisms will become more commonplace as a tool to validate and interpret experimental data, and provide a check on the plausibility of geochemical kinetic models.
Introduction -why molecular simulation?Current and future needs for geochemistry include the capacity to assess the risk and effect of anthropogenic activities. Examples include the certification of the long-term fate and transport of contaminants during nuclear waste disposal, caprock integrity and extent of mineral trapping during geologic carbon sequestration, provenance and treatment of flowback water during hydraulic fracturing, and other critical needs for society. Our ability to assess risk and effects could improve with better, more quantitative, estimates of the rates and mechanisms of geochemical processes. Molecular simulation might be able to help us improve that predictive capability, but how it will do so is not necessarily self-evident. After all, when these subjects are applied, it is often in 'muddy boot' settings in the field, e.g. collecting pore water, core or sediment samples from monitoring wells or waste stream effluent. It is difficult to make the Andrew G. Stack is a Senior R&D Staff Member in the Geochemistry and Interfacial Sciences Group, Chemical Sciences Division at Oak Ridge National Laboratory. He is a geochemist who specialises in understanding the kinetics and mechanisms of mineral reactions, and how these inherently molecular-level processes manifest themselves at larger scales. Reactions he has examined include mineral grow...