“…Protein biomarkers in tissues have been extensively investigated and the findings were summarized in Table 1. These newly identified protein biomarkers are involved in pathways dysregulated by chemoradiation, including DNA repair (X-ray repair cross-complementing protein 2 (XRCC2) [58], ataxia telangiectasia mutated (ATM) [59], meiotic recombination 11 homolog A (MRE11) [59], PCNA-associated factor 15 (Paf15) [60]), cell cycle (polo-like kinase 1 (Plk1) [61], and vaccinia-related kinase-1 and -2 (VRK1 and VRK2) [62]), cell proliferation (c-MYC and proliferating cell nuclear antigen (PCNA) [63], golgi phosphoprotein 3 (GOLPH3) [64], focal adhesion kinase (FAK) [65], fibroblast growth factor receptor 4 (FGFR4) [66], and nuclear factor-κB (NF-κB) [67]), apoptosis (survivin [68], and apoptotic protease-activating factor 1 (APAF-1) and COX2 [69]), autophagy (Beclin 1 [70]), cell adhesion (Plectin-1 (PLEC1) [71] and desmoglein 3 (DSG3) [72]), cell motility (transgelin (TAGLN) [71]), and metabolism (vascular non-inflammatory molecule 1 (VNN1) [73], transketolase (TKT) and hydroxyacyl-CoA dehydrogenase (HADHA) [71], and 17-β-hydroxysteroid dehydrogenase type 2 (HSD17B2) and 3-hydroxy-3-methylglutaryl coenzyme A synthase (HMGCS2) [74]). Li et al developed a three-protein biomarker panel consisting of c-MYC, PCNA, and tissue inhibitor of metalloproteinases 1 (TIMP1) for prediction of prognosis in 329 locally advanced rectal cancer patients.…”