Hierarchically nanostructured binary/multiple transition-metal oxides with electrically conductive coatings are very attractive for lithium-ion batteries owing to their excellent electrochemical properties induced by their unique compositions and microstructures. Herein, hierarchical MnO-doped FeO@C composite nanospheres are prepared by a simple one-step annealing in Ar atmosphere, using Mn-doped Fe-based metal-organic frameworks (Mn-doped MIL-53(Fe)) as precursor. The MnO-doped FeO@C composite particles have a uniform nanosphere structure with a diameter of ∼100 nm, and each nanosphere is composed of clustered primary nanoparticles with an amorphous carbon shell, forming a unique hierarchical nanoarchitecture. The as-prepared hierarchical MnO-doped FeO@C composite nanospheres exhibit markedly enhanced lithium-storage performance, with a large capacity of 1297.5 mAh g after 200 cycles at 200 mA g. The cycling performance is clarified through analyzing the galvanostatic discharge/charge voltage profiles and electrochemical impedance spectra at different cycles. The unique microstructures and Mn element doping of the hierarchical MnO-doped FeO@C composite nanospheres lead to their enhanced lithium-storage performance.