This special issue of C—Journal of Carbon Research is dedicated to “Functional Nanoporous Carbon-Based Materials”. It contains contributions reporting on the synthesis of nanoporous carbons for the adsorption of proteins, their applications in electrochemical energy storage/conversion, and on the characterization/modification of their surface chemistry. Nanoporous carbon-based materials are widely researched, but at the same time, the field is still full of unutilized potential. The atomic construction of the carbon framework, pore sizes, pore geometries, presence of heteroatoms, particle size and shape, and many other “internal screws” are available; in the end, the high potential of carbon-based materials will only be fully explored if the interplay of these crucial factors is precisely controlled. This article is a summary of what we consider important for future targeted improvement of porous carbon nanomaterials for energy and environmental applications.