We determined the ␦ 13 C and ␦ 15 N of water-column particulate organic matter (POM), dissolved inorganic carbon, and nitrate, together with water chemistry and phytoplankton biomass and species composition every month in eutrophic Lake Lugano. As primary productivity increased during spring, the ␦ 13 C of photic-zone POM increased from Ϫ34‰ to Ϫ24‰. This 13 C enrichment reflects decreasing C-isotope fractionation between organic and inorganic carbon pools in response to decreasing surface water [CO 2 (aq)]. Variations in the ␦ 15 N of surface-water POM (ϩ2‰ to ϩ8‰) collected during the productive period were attributed to isotope effects associated with nitrate uptake, nitrogen fixation, and mixing of different organic matter sources. The apparent N-isotope enrichment () associated with nitrate assimilation varied with ϭ Ϫ1.0‰ Ϯ 0.9 for diatoms and ϭ Ϫ3.4‰ Ϯ 0.4 for green algae. The mechanisms controlling the N-isotopic composition of surface-water nitrate include the combined processes of nitrate assimilation, nitrification, mixing of water masses, and external nitrate loading. There was no consistent relation between the ␦ 15 N of POM, the ␦ 15 N of nitrate, and the nitrate concentration in surface waters. Low ␦ Stable carbon and nitrogen isotope measurements of autochthonous material from aquatic environments have proven to be a powerful tool to better understand biologically driven carbon and nitrogen cycles. Such studies helped to assess the sources and cycling of organic matter (e.g., Cifuentes et al. 1988;Bernasconi et al. 1997;Huon et al. 2002) and to identify microbial processes (e.g., Ostrom et al. 1997;Brandes et al. 1998). Through the carbon and nitrogen stable isotope analysis of sediments, insights may be gained into the trophic evolution of lakes, provided that the processes controlling isotope fractionation during organic matter synthesis and degradation are well understood. For example, the C-isotopic composition of lacustrine organic matter has been used as a proxy indicator for primary productivity, pCO 2 (aq) and CO 2 versus HCO uptake (Hollander and McKenzie Ϫ 3 1991;Ostrom et al. 1997; Hodell and Schelske1998).Variations in the isotopic composition of organic and inorganic nitrogen species in aquatic environments can be re-