The aim of this study was to estimate water purification capacity and greenhouse gas fluxes in a semi-natural reedbed receiving effluent from a wastewater treatment plant (WTP) in Lihula, which is located on the southern border of Matsalu National Park, Estonia. The values of BOD 7 and COD in the treated water were low (<8 and <70 mgL -1 respectively), whereas the COD level increased within the reedbed. The average concentrations of ammonia N and total N significantly decreased from the WTP outflow to the reedbed outflow (from 6.8 and 9 to 0.2 and 1.2 mg L -1 respectively). Nitrate and nitrite N levels were low but decreased along the flow. The average concentration of both PO 4 -P and total P in water decreased rapidly toward the reedbed outflow (from 2.8 and 3.2 to 0.04 and 0.09 mg L -1 respectively). Redox potential and dissolved O 2 saturation showed the lowest values in the reedbed inflow. The C, N, and P concentration in soil decreased from the reedbed inflow towards the outflow. The average N 2 and N 2 O fluxes from the reedbed were relatively low, varying from 4.0 to 16.1 mg N 2 m -2 h -1 and from -5.0 to 3.7 μg N 2 O m -2 h -1 respectively. The spatial-temporal variation of methane emission was great (10.5-16397 μg CH 4 m -2 h -1 ), showing higher values in the inflow. The average CO 2 emission from the reedbed varied from 14.3 to 334 mg CO 2 -C m -2 h -1 , being somewhat higher in the inflow area. Accumulation of C, N and P in soil, increasing COD values and falling redox potential/dissolved O 2 values in water, and higher CH 4 and CO 2 emission rates in the inflow site of the reedbed demonstrate the long-term impact of sewage loading.