During early postnatal development in the rat hippocampus, synaptogenesis occurs in parallel with a developmental switch in the subunit composition of NMDA receptors from NR2B to NR2A. It is unclear how this switch affects the process of synaptogenesis, synapse maturation, and synapse stabilization. We investigated the role of NR2 subunits in synaptogenesis during the period in which expression and synaptic incorporation of the NR2A protein begins through the time when it reaches adult levels. We found that early expression of NR2A in organotypic hippocampal slices reduces the number of synapses and the volume and dynamics of spines. In contrast, overexpression of NR2B does not affect the normal number and growth of synapses; however, it does increase spine motility, adding and retracting spines at a higher rate. The C terminus of NR2B, and specifically its ability to bind CaMKII, is sufficient to allow proper synapse formation and maturation. Conversely, the C terminus of NR2A was sufficient to stop the development of synapse number and spine growth. Our results indicate that the ratio of synaptic NR2B over NR2A controls spine motility and synaptogenesis, and suggest a structural role for the intracellular C terminus of NR2 in recruiting the signaling and scaffolding molecules necessary for proper synaptogenesis.S ynaptic connectivity in the brain is the result of a delicate balance between synaptogenesis and synaptic pruning. Changes in synaptic connectivity drive the refinement of neuronal circuits during development (1) and are thought to underlie the formation of memories and acquisition of behaviors (2). Disruption of this balance has been linked to abnormal brain development and neuropsychiatric disorders such as Alzheimer's disease and schizophrenia (3).In rat hippocampus, during the 2 wk following birth a large number of synaptic connections are assembled; some subsets of these are stabilized, and others are lost (4). During the same period, NMDA-type glutamate receptors (NMDARs) undergo a developmental switch from containing the NR2B subunit to containing the NR2A subunit (5). This switch accelerates the kinetics of NMDAR-mediated excitatory postsynaptic currents (EPSCs) (6, 7) and decreases the ability of the synapse to undergo potentiation (8, 9). Recent evidence also indicates that NMDARs play a structural role in the long-term stabilization of synapses and spines (10); however, it is not known whether NR2 subunit composition influences the process of synaptogenesis, synaptic pruning, and synapse stabilization.NR2 subunits bind glutamate and determine the functional properties of NMDAR channels (11). NR2A and NR2B subunits are closely related in amino acid sequence; however, the large intracellular C terminus exhibits only 54% identical or similar amino acids (12). Differential interactions between intracellular signaling complexes and NMDAR C termini have been proposed to play important roles in synaptic plasticity (8,9,13,14). Importantly, the interaction of active CaMKII and NR2B C terminus is ne...