Vicinal cysteine disulfides are thought to be associated with specific conformations of cysteine disulfides due to the restricted rotation of single bonds in an eightmembered cyclic disulfide loop. Conformations of vicinal cysteine disulfides are analyzed using χ 1 , χ 2 , χ 3 , χ 2 ', χ 1 ' torsion angles in the crystal structures of proteins retrieved from Protein Data Bank (PDB). 85% of vicinal disulfides have (+, −)LHStaple conformation with trans configuration of the peptide bond and 9% have (−, −) RHStaple conformation with cis configured peptide bond. Conformational analysis of dipeptide Cys-Cys vicinal disulfide by density functional theory (DFT) further supported (+, −)LHStaple, (−, −)RHStaple, and (+, +)RHStaple as the preferred conformations of vicinal disulfides. Interestingly, the rare conformations of vicinal disulfides are observed in the ligand-bound forms of proteins and have higher disulfide strain energy. Conformations of vicinal disulfides in palmitoyl protein thioesterase 1, AChBP, and α7 nicotinic receptor are changed from preferred (+, −)LHStaple to rare (+, −)AntiLHHook/(+, −)AntiRHHook/(+, +)RHStaple conformation due to binding of ligands. Surprisingly, ligands are proximal to the vicinal disulfides in protein complexes that exhibited rare conformations of vicinal disulfides. The report has identified (+, −) LHStaple/(−, −) RHStaple as the hallmark conformations of vicinal disulfides and unraveled ligand-induced transition in conformations of vicinal cysteine disulfides in proteins. K E Y W O R D S conformation, crystal structure of proteins, ligand, Protein Data Bank, vicinal cysteine disulfide
| INTRODUCTIONVicinal cysteine disulfide is the smallest intramolecular disulfide loop in proteins with a cyclic eight-membered ring containing either cis (or) trans configured peptide bond. [1][2][3][4] The formation of the disulfide bond between adjacent cysteine residues in the sequence results in a vicinal disulfide which is a rare, hydrophobic, and unique structural motif in polypeptide. [5][6][7][8] The constrain imposed due to ring size may restrict free rotation of side-chain single bonds of vicinal disulfide limiting their conformational space. 4,9 The restricted rotations may enforce vicinal disulfide to accommodate specific conformations of disulfides which may serve as hallmark conformations of vicinal cysteine disulfides. Structural disulfides are associated with -LHSpiral, catalytic disulfides with +/-RHHook and allosteric disulfide with -RHStaple/-LHStaple conformation. [10][11][12] Similarly, vicinal cysteine disulfides can also be mapped with the specific conformations of Abbreviations: +/−, positive/negative torsion angle; AChBP, acetyl choline binding protein; DSE, disulfide strain energy (or) dihedral strain energy; LH/RH, left-handed/right-handed; PDB, Protein Data Bank.