Among
20 compounds isolated from the extracts of Ouratea
ferruginea the 5,4′-dihydroxy-7,5′,3′-trimethoxyisoflavone
(9) showed the best inhibitory effect on glutathione S-transferase (GST) and so deserves our attention. In this
work we investigated the preferred molecular structure of 9 in chloroform solution using the density functional theory (DFT)
and molecular dynamics simulation. Comparison between experimental 1H NMR data in CDCl3 solution and calculated chemical
shifts enabled us to precisely determine the conformation adopted
by 9 in solution, which can be used in further theoretical
studies involving interaction with biological targets. Moreover, the
experimental NMR data were used as reference to assess the ability
of DFT based methods to predict 1H NMR spectrum in solution
for organic compounds. Among various DFT functionals the hybrid B3LYP
was the most adequate for the calculation of chemical shifts in what
CH
n
protons are concerned. Regarding the
OH hydrogen, inclusion of explicit CHCl3 solvent molecules
adequately placed around the solute led to good agreement with the
experimental chemical shifts (in CDCl3). It is a well-known
fact that theoretical prediction of chemical shifts for OH hydrogens
poses as a challenge and also revealed that the way the solvent effects
are included in the DFT calculations is crucial for the right prediction
of the whole 1H NMR spectrum. It was found in this work
that a supermolecule solute–solvent calculation with a minimum
of four CHCl3 molecules is enough to correctly reproduce
the 1H NMR experimental profile observed in solution, revealing
that the calculated solvated structure used to reproduce the NMR chemical
shifts is not unique.