In Neurospora crassa, pairing of homologous DNA segments is monitored during meiotic prophase I. Any genes not paired with a homolog, as well as any paired homologs of that gene, are silenced during the sexual phase by a mechanism known as meiotic silencing by unpaired DNA (MSUD). Two genes required for MSUD have been described previously: sad-1 (suppressor of ascus dominance), encoding an RNAdirected RNA polymerase, and sad-2, encoding a protein that controls the perinuclear localization of SAD-1. Inactivation of either sad-1 or sad-2 suppresses MSUD. We have now shown that MSUD is also suppressed by either of two Spore killer strains, Sk-2 and Sk-3. These were both known to contain a haplotype segment that behaves as a meiotic drive element in heterozygous crosses of killer 3 sensitive. Progeny ascospores not carrying the killer element fail to mature and are inviable. Crosses homozygous for either of the killer haplotypes suppress MSUD even though ascospores are not killed. The killer activity maps to the same 30-unit-long region within which recombination is suppressed in killer 3 sensitive crosses. We suggest that the region contains a suppressor of MSUD. S EXUAL reproduction in Neurospora crassa is mediated by the fusion of two haploid nuclei that carry compatible mating-type genes (mat A and mat a). The haploid nuclei proliferate in specialized premeiotic ascogenous tissue (precroziers and three-celled croziers) within the fertilized fruiting body (perithecium). Two nuclei of opposite mating type that are sequestered in the subapical cell of the crozier then migrate into a tubular sac (ascus) and fuse to create the zygote, which immediately undergoes two meiotic divisions and a postmeiotic mitosis. The resulting eight haploid nuclei reside in the same cytoplasm until they are sequestered into eight linearly ordered ascospores. The mating-type locus and other segregating markers show 1:1 segregation (Raju 1992;Davis 2000).Meiotic drive is a phenomenon in which certain chromosomal loci show a progeny ratio different from 1:1 and one allele is favored over the other. Examples of meiotic drive in animals include the segregation distorter (SD) system of Drosophila melanogaster and the t haplotype in the mouse (Lyttle 1991a,b;Schimenti 2000;Kusano et al. 2003). In heterozygous males, the meiotic products that do not carry the drive element (SD chromosome or t haplotype) fail to differentiate into functional sperm. Although meiotic drive is widespread in insects, mammals, plants, and fungi, very few cases have been dissected at the molecular level (Pennisi 2003;Burt and Trivers 2006).In Neurospora, Spore killers are chromosomal elements that cause the death of ascospores that do not contain the killer element (Turner and Perkins 1979, 1991). For example, in a cross of Spore killer 3 wild type (Sk sensitive), every mature ascus contains four normalsized, black, viable ascospores and four tiny, undeveloped ascospores that are inviable (see Figure 2A). All survivors carry the killer element. When both kill...