Atomically twisted van der Waals materials featuring Moiré patterns present new design possibilities and demonstrate unconventional behaviors in electrical, optical, spintronic, and superconducting properties. However, experimental exploration of thermal transport across Moiré patterns has not been as extensive, despite its critical role in nanoelectronics, thermal management, and energy conversion. Here, we conduct the first experimental investigation into thermal transport across twisted graphene, demonstrating the concept of a phonon polarizer achieved by manipulating the rotational misalignment between adjacent stacked layers. Our approach includes thorough structural characterizations and atomistic modeling of various twisted graphene configurations, along with direct measurements of thermal and acoustic transport using ultrafast spectroscopies. For the first time, we have measured a significant modulation – up to 631% – in the thermal conductance of twisted graphene by reducing phonon transmissions as a function of Moiré angles, while a high acoustic transmission maintains across all twist configurations. By comparing experiments with first‐principles calculations using density functional theory and molecular dynamics simulations, mode‐dependent phonon transmission between monolayer graphene are quantified based on the angle alignment of phonon band structures. We investigate mode‐specific phonon transmission and attribute the pronounced polarizing effect to the distortion over the coupling phase space especially from flexural phonon modes. The modeling results agree with experimental data, verifying the dominant tuning mechanisms in adjusting phonon transmission from high‐frequency thermal modes while negligible effects on low‐frequency acoustic modes near Brillouin zone center. This study offers crucial insights into the fundamental thermal transport in Moiré structures, opening avenues for the invention of advanced thermal devices and new design methodologies based on manipulations of vibrational band structures and phonon spectra.This article is protected by copyright. All rights reserved