Tuberculous pleurisy is one of the most common types of extrapulmonary tuberculosis, but its diagnosis remains difficult. In this study, we report for the first time on the detection of cell-free Mycobacterium tuberculosis DNA in pleural effusion and an evaluation of a newly developed molecular assay for the detection of cell-free Mycobacterium tuberculosis DNA. A total of 78 patients with pleural effusion, 60 patients with tuberculous pleurisy, and 18 patients with alternative diseases were included in this study. Mycobacterial culture, the Xpert MTB/RIF assay, the adenosine deaminase assay, the T-SPOT.TB assay, and the cell-free Mycobacterium tuberculosis DNA assay were performed on all the pleural effusion samples. The cell-free Mycobacterium tuberculosis DNA assay and adenosine deaminase assay showed significantly higher sensitivities of 75.0% and 68.3%, respectively, than mycobacterial culture and the Xpert MTB/RIF assay, which had sensitivities of 26.7% and 20.0%, respectively (P Ͻ 0.01). All four of these tests showed good specificities: 88.9% for the adenosine deaminase assay and 100% for the remaining three assays. The T-SPOT.TB assay with pleural effusion showed the highest sensitivity of 95.0% but the lowest specificity of 38.9%. The cell-free Mycobacterium tuberculosis DNA assay detected as few as 1.25 copies of IS6110 per ml of pleural effusion and showed good accordance of the results between repeated tests (r ϭ 0.978, P ϭ 2.84 ϫ 10 Ϫ10 ). These data suggest that the cell-free Mycobacterium tuberculosis DNA assay is a rapid and accurate molecular test which provides direct evidence of Mycobacterium tuberculosis etiology.KEYWORDS Mycobacterium tuberculosis, cell-free DNA, pleural effusion T uberculous pleurisy (TP) is one of the most common extrapulmonary manifestations of tuberculosis, but its diagnosis is quite challenging (1). The definite diagnosis of TP is made by detecting Mycobacterium tuberculosis from the pleural effusion (PE), sputum, or pleural tissue (1, 2). However, due to the paucity of M. tuberculosis organisms in PE, culture and molecular tests like the Xpert MTB/RIF assay show poor sensitivities (3-5).Other assays for the immunochemical biomarkers mostly reported in PE are the adenosine deaminase assay (ADA), the interferon gamma (IFN-␥) assay, and IFN-␥ release assays (IGRAs). Adenosine deaminase and IFN-␥ are believed to be released during the immune response triggered by the presence of mycobacterial antigens in the pleural cavity. Recent meta-analyses show that adenosine deaminase and IFN-␥ appear to be relatively accurate biomarkers for TP diagnosis. However, a wide range of diagnostic cutoff values may cause heterogeneity (6-9). IGRAs are T-cell-based assays that measure IFN-␥ release by sensitized T cells in response to M. tuberculosis-specific antigens. The presence of IFN-␥ is a strong indicator of M. tuberculosis infection, but the value of IGRAs for the diagnosis of TP is still controversial. Some studies show that