Thinfilms of bacteriorhodopsin are used to manipulate amplitude, phase, polarization of the incident light for a variety of applications like all-optical switching, logic gates, power limiting, optical Fourier processing for breast cancer diagnostics, slow/fast light.
BacteriorhodopsinBacteriorhodopsin (bR) is a photodynamic protein complex found in Halobacterium halobium in salt marshes. The unique feature is its flexibility. Absorption of a photon by bR triggers the photo cycle as shown in figure 1. Upon absorption of a visible photon, within the broad absorption with a maximum at 570 nm, the bR molecule goes through short lived intermediate states and transforms to the relatively long-lived M state, with an absorption peak at 412 nm. Molecules in the M-state can be thermally transformed into the initial B state or they can go back directly to B state within 200 ns upon shining blue light. Ignoring the short lived states, it can be approximated as a two level system with the unique advantage of being able to vary the M-state lifetime over orders of magnitude. The process of switching between B and M states (trans-cis photoisomerization) can go in both directions depending on wavelength, intensity and polarization of the incident light, opening a variety of possibilities for manipulating amplitude, phase, polarization of the incident light and the index of refraction. It is a nontraditional nonlinear optical material with exceptionally high values of nonlinearity of order 1 esu. A significant advantage of this system is that it is environmental friendly. Over the years we studied the basic nonlinear optics, four-wave mixing, phase conjugation, z-scan, and photoinduced anisotropy using microwatt power lasers and successfully exploited the unique properties for a variety of applications -all optical switching, modulation, optical Fourier processing, optical computing, power limiting for laser eye protection, medical image processing for early detection of breast cancer, transient Fourier holography etc [1][2][3][4][5][6][7][8][9][10][11][12][13].Spatial filtering, a simple image processing technique, is ideally suited to enhance the pathological changes in medical images such as microcalcifications in mammograms. It is well-known from Fourier optics that an optical lens can transform a plane wave into a paraboloidal wave focused at the focal plane of the lens [14]. Waves of different spatial frequencies will be mapped to different points in the focal plane -low spatial frequencies occur at the center with high intensity and high spatial frequencies are at the edges with low intensity. In conventional spatial filtering, a physical mask is placed at the Fourier plane and the low spatial frequencies corresponding to amplitude of the image are physically blocked. Inverse Fourier transform of the filtered beam will display only the high spatial frequencies. Microcalcifications are tiny calcium deposits in human breast which correspond to high spatial frequencies due to their small size and diffuse nature. The informati...