We study the time-dependent Aharonov-Bohm effect on the noncommutative space. Because there is no net Aharonov-Bohm phase shift in the time-dependent case on the commutative space, therefore, a tiny deviation from zero indicates new physics. Based on the Seiberg-Witten map we obtain the gauge invariant and Lorentz covariant Aharonov-Bohm phase shift in general case on noncommutative space. We find there are two kinds of contribution: momentum-dependent and momentum-independent corrections. For the momentum-dependent correction, there is a cancellation between the magnetic and electric phase shifts, just like the case on the commutative space. However, there is a non-trivial contribution in the momentumindependent correction. This is true for both the time-independent and time-dependent Aharonov-Bohm effects on the noncommutative space. However, for the time-dependent Aharonov-Bohm effect, there is no overwhelming background which exists in the time-independent Aharonov-Bohm effect on both commutative and noncommutative space. Therefore, the time-dependent Aharonov-Bohm can be sensitive to the spatial noncommutativity. The net correction is proportional to the product of the magnetic fluxes through the fundamental area represented by the noncommutative parameter θ, and through the surface enclosed by the trajectory of charged particle. More interestingly, there is an anti-collinear relation between the logarithms of the magnetic field B and the averaged flux Φ/N (N is the number of fringes shifted). This nontrivial relation can also provide a way to test the spatial noncommutativity. For BΦ/N ∼ 1, our estimation on the experimental sensitivity shows that it can reach the 10GeV scale. This sensitivity can be enhanced by using stronger magnetic field strength, larger magnetic flux, as well as higher experimental precision on the phase shift.