Femtosecond laser vaporization-based mass spectrometry can be used to measure protein conformation in vitro at atmospheric pressure. Cytochrome c and lysozyme are vaporized from the condensed phase into the gas phase intact when exposed to an intense (10 13 W∕cm 2 ), nonresonant (800 nm), ultrafast (75 fs) laser pulse. Electrospray postionization time-of-flight mass spectrometry reveals that the vaporized protein maintains the solution-phase conformation through measurement of the charge-state distribution and the collision-induced dissociation channels.multiphoton | nonthermal T he interaction of intense, ultrashort laser pulses with matter has resulted in a number of remarkable unique phenomena including above threshold ionization (1, 2), high harmonic generation (3-5), Coulomb explosion (6), nonadiabatic excitation of polyatomic molecules (7,8), neutron emission from clusters (9, 10), and the creation of attosecond laser pulses (5). Intense lasermatter interactions are currently used to determine polyatomic molecular electronic structure (11) and nuclear dynamics (12). Biomolecular structure determination represents a unique frontier for ultraintense laser experiments. In this regard, methods to deliver nonvolatile biological molecules intact into the gas phase, preferably maintaining condensed phase structure, are of interest. We recently reported that intense, nonresonant, ultrafast laser pulses could be used to deliver proteins with molecular weights up to 45 kDa into the gas phase without fragmentation (13). One motivation for this investigation is that for femtosecond laser vaporization to be of value for protein structural determination, the vaporization must ideally preserve the condensed phase primary, secondary, and tertiary conformation. Another motivation is the fact that the analysis of biological structure in situ presents a significant challenge. As a first step toward this goal, we investigate the conformation of proteins vaporized from the solution phase, in vitro, using intense, nonresonant femtosecond laser pulses.The biological function of a protein is determined by both primary sequence and structural conformation, with the latter governed by inter-and intramolecular covalent and noncovalent interactions. Techniques such as X-ray crystallography (14), NMR spectroscopy (15), and hydroxyl-radical protein footprinting (16) are commonly used to determine protein conformation and to probe noncovalent interactions. Another emerging method, electrospray ionization mass spectrometry (ESI-MS) (17) can be used to assess protein conformation in the electrospray solvent solution because folded protein typically displays one or two intense peaks in the mass spectrum (18). Protein in an unfolded conformation results in a bell-shaped distribution of the peaks with the centroid of the distribution occurring at a lower m∕z value (than the folded features) due to the basic amino acids being revealed and protonated (18). Changes in temperature, solvent, pH, and salt concentration will alter the equilibrium c...