Chemicals enable the development of new technologies while also raising living standards and quality of life. Although chemicals are used in many aspects of daily life, such as the advance of innovative technologies and the improvement of living values, many of them are discharged into the aqueous environment which may lead to negative environmental health effects such as endocrine disorders, reduced reproductive rates, reduced life expectancy and insomnia. In this study, a high performance liquid chromatography connected to hybrid triple quadrupole ion trap mass spectrometer was used for qualitative non-target screening of emerging contaminants in water sources. The analytes were detected in five rivers, five dams, three wastewater treatment works and two drinking water treatment plants. The qualitative screening of emerging contaminants in these urban and natural water sources revealed 32 analytes under pharmaceutical and pesticide groups. From these groups, stimulants and herbicides were the most dominant. Among the analytes found in urban and natural waters of Mangaung District, three stimulants (ephedrine, nicotine, and metformin) and two herbicides (terbuthylazine, and sebuthylazine) were mostly detected. High number of these analytes (diphenhydramine, orphenadrine, cyclicine, paracetamol, sulfamethoxazol, metformin, bezafibrate, lamivudine, THC-COOH, methamphetamine, nicotine, ephedrine, theophylline, hordenine, sebuthylazine, atrazine, simazine, terbuthylazine, metolachlor, carbendazim, diazinon, and simazine) was observed in river samples and least in treated drinking water. Most notable was the detection of terbuthylazine in all samples collected in dams, effluent and treated drinking water. The ubiquitous presence of terbuthylazine in water sources may possibly lead to some environmental health risks. The findings of this study may be used for target analysis of these chemicals in future monitoring and risk assessment studies in the Free State region, where emerging contaminants research is limited. Furthermore, it may assist water managers and policymakers in assessing water quality and managing pollution more effectively.