Background: Mitochondrial complex I deficiency is a common inherited metabolic disease. Results: B2 transposable element insertion into Ndufs4 in mice causes loss of the "N assembly module" of complex I, alterations in cellular metabolites, and neurological symptoms. Conclusion: NDUFS4 subunit is required for complex I stability. Significance: Understanding the effects of oxidative phosphorylation defects is essential for the development of treatments.