The
crystal structure of the dopamine D3 receptor (D3R) in complex with eticlopride inspired the design of bitopic
ligands that explored (1) N-alkylation of the eticlopride’s
pyrrolidine ring, (2) shifting of the position of the pyrrolidine
nitrogen, (3) expansion of the pyrrolidine ring system, and (4) incorporation
of O-alkylations at the 4-position. Structure activity
relationships (SAR) revealed that moving the N- or
expanding the pyrrolidine ring was detrimental to D2R/D3R binding affinities. Small pyrrolidine N-alkyl groups were poorly tolerated, but the addition of a linker
and secondary pharmacophore (SP) improved affinities. Moreover, O-alkylated analogues showed higher binding affinities compared
to analogously N-alkylated compounds, e.g., O-alkylated 33 (D3R, 0.436 nM and
D2R, 1.77 nM) vs the N-alkylated 11 (D3R, 6.97 nM and D2R, 25.3 nM).
All lead molecules were functional D2R/D3R antagonists.
Molecular models confirmed that 4-position modifications would be
well-tolerated for future D2R/D3R bioconjugate
tools that require long linkers and or sterically bulky groups.