Under free running conditions, FREQUENCY (FRQ) protein, a central component of the Neurospora circadian clock, is progressively phosphorylated, becoming highly phosphorylated before its degradation late in the circadian day. To understand the biological function of FRQ phosphorylation, kinase inhibitors were used to block FRQ phosphorylation in vivo and the effects on FRQ and the clock observed. 6-dimethylaminopurine (a general kinase inhibitor) is able to block FRQ phosphorylation in vivo, reducing the rate of phosphorylation and the degradation of FRQ and lengthening the period of the clock in a dose-dependent manner. To confirm the role of FRQ phosphorylation in this clock effect, phosphorylation sites in FRQ were identified by systematic mutagenesis of the FRQ ORF. The mutation of one phosphorylation site at Ser-513 leads to a dramatic reduction of the rate of FRQ degradation and a very long period (>30 hr) of the clock. Taken together, these data strongly suggest that FRQ phosphorylation triggers its degradation, and the degradation rate of FRQ is a major determining factor for the period length of the Neurospora circadian clock. C ircadian clocks are found in almost all groups of organisms, and they control a wide variety of daily (Ϸ24-hr) endogenous (circadian) rhythms of molecular, physiological, and behavioral activities in these organisms (1). The identification of clock genes in several model systems and the understanding of how these genes are regulated have greatly enhanced our knowledge of how circadian clocks work at the molecular level (1-8). Common themes of clock mechanisms have begun to emerge: clock components comprising a core of the oscillator are part of a network of positive and negative interactions that establish a negative feedback loop that is essential for circadian oscillation (1, 9-16).The Neurospora circadian oscillator comprises an autoregulatory negative feedback cycle in which frq mRNA and FRQ protein are the central components (1,17,18). Mutations at the frq locus cause a variety of clock phenotypes: long and short period length (16-29 hr), arrhythmia, and loss of temperature and nutritional compensation of the clock; the deletion of the frq locus results in loss of normal circadian rhythmicity (18). Both frq mRNA and FRQ protein are rhythmically expressed in a daily fashion, and FRQ protein acts to repress the abundance of its own transcript (17,19,20). Importantly, the rhythmic expression of frq is essential for the negative feedback loop as shown by the facts that constitutive expression of frq results in the loss of the overt rhythm and step changes in frq expression reset the phase of the clock (17). Light and temperature, two of the most important environmental signals, reset the Neurospora clock by changing the levels of frq mRNA and FRQ protein (21,22).In addition to transcriptional control, frq is subject to several aspects of posttranscriptional regulation (23). First, two forms of FRQ protein are expressed because of initiation at alternative ATGs, a large form of 9...