Based on non-affine models of hypersonic space vehicles, the tracking control problem of hypersonic vehicles is studied and analyzed in this article using funnel robust model-free control mechanism considering parametric uncertainty and external disturbances. First, the control system is decomposed into altitude subsystem and velocity subsystem. For altitude subsystem, we propose a concise funnel robust model-free control mechanism based on error driving, and a novel model transformation approach is applied to the controller design. The new model-free controller only contains a Hurwitz stable term and a filtering term, and does not need precise motion model and too much calculation, so it can improve the calculation speed of the system. For velocity subsystem, only a concise proportional-integral controller is needed to meet the tracking requirements. Moreover, the devised controller is capable of guaranteeing funnel performance on the altitude and velocity tracking errors. Finally, numerical simulation results are presented to verify the efficiency of the design.