Cytoplasm-to-nucleus translocation of Smad is a fundamental step in transforming growth factor  (TGF-) signal transduction. Here we identify a subset of nucleoporins that, in conjunction with Msk (Drosophila Imp7/8), specifically mediate activation-induced nuclear translocation of MAD (Drosophila Smad1) but not the constitutive import of proteins harboring a classic nuclear localization signal (cNLS) or the spontaneous nuclear import of Medea (Drosophila Smad4). Surprisingly, many of these nucleoporins, including Sec13, Nup75, Nup93, and Nup205, are scaffold nucleoporins considered important for the overall integrity of the nuclear pore complex (NPC) but not known to have cargo-specific functions. We demonstrate that the roles of these nucleoporins in supporting Smad nuclear import are separate from their previously assigned functions in NPC assembly. Furthermore, we uncovered novel pathway-specific functions of Sec13 and Nup93; both Sec13 and Nup93 are able to preferentially interact with the phosphorylated/activated form of MAD, and Nup93 acts to recruit the importin Msk to the nuclear periphery. These findings, together with the observation that Sec13 and Nup93 could interact directly with Msk, suggest their direct involvement in the nuclear import of MAD. Thus, we have delineated the nucleoporin requirement of MAD nuclear import, reflecting a unique trans-NPC mechanism.Transforming growth factor  (TGF-) cytokines critically regulate a diverse array of cellular properties in development and homeostasis, through an evolutionarily conserved mechanism that centers around the Smad transcription factors (18, 34). TGF- induces phosphorylation of the Smad proteins and consequently drives Smads into the nucleus, ensuring that changes in the gene transcription program are strictly signal dependent (24,26). Two critical elements in nuclear import are the transport receptors (i.e., karyopherins or importins) and the nuclear pore complex (NPC) (28, 30). We recently identified Imp7/8 as the importin for TGF--activated Smads, but how the Imp7/8-Smad complex translocates through the NPC has yet to be elucidated (36). The NPC consists of more than 30 evolutionarily conserved nucleoporins, each with a particular localization within the NPC based on biochemical, biophysical, electron microscopy, and computational studies (2,3,25). Many nucleoporins contain repeats of phenylalanine-glycine (FG), and the highly hydrophobic and unstructured FG domains occupy the central tunnel of the NPC, constituting a gating mechanism that restricts the movement of macromolecules through the NPC (19). In vivo genetic studies have suggested redundancy among FG domains in maintaining the permeability barrier as well as nuclear import (29, 38). On the other hand, many of the non-FG nucleoporins assemble into subcomplexes within the NPC, most prominently the Nup107-160 (consisting of Nup107, Nup133, Nup75, Sec13, and Seh1, etc.) and Nup53-93 (containing Nup53, Nup93, and Nup205, etc.) complexes, and they are believed to serve mostly as scaffo...