Reciprocity denotes the (approximate) equality of the electronic stopping cross section of element A in element B with the one of element B in element A. Reciprocity is expected in the energy range below ∼ 0.1 MeV/u. For ions heavier than protons, most measurements are performed by the transmission technique. In order to minimize nuclear energy loss, only a narrow beam of penetrating ions is allowed to enter the detector. This implies that also the electronic energy loss is underestimated. We have estimated the magnitude of the necessary correction on the basis of the PASS code and its influence on the expected reciprocity and find that reciprocity is not necessarily violated, even if the reported cross sections differ significantly. However, we also find differences between reported stopping cross sections and computed reduced stopping cross sections that we cannot reconcile on the basis of the PASS code. These differences are found to reflect the well-known Z 1 structure, which is not inherent in the present version of PASS.