bmp gene family 36 of Borrelia burgdorferi, the agent of Lyme disease, comprises four paralogs: bmpA, bmpB, bmpC, and bmpD. The bmpA and bmpB genes constitute an operon. All four genes have been found to be transcribed in cultured spirochetes. Expression from the bmpAB operon results in three distinct transcripts of 1.1, 1.6, and 2.4 kb, and the relative expression of bmpA mRNA is three-to fourfold greater than that of bmpB mRNA. However, thus far only expression of the BmpA protein has been demonstrated. Therefore, in this study we characterized the origins of the three transcripts and compared the relative expression of the BmpA and BmpB proteins. Northern blotting revealed that the three distinct transcripts originated from a single promoter located upstream of bmpA but terminated either 3 to the bmpA (1.1-kb RNA) or bmpB (2.4-kb RNA) gene or, most unusually, within the bmpB gene (1.6-kb RNA). Termination within the bmpB gene was associated with a functional Rho-independent transcription terminator. At the protein level, we also observed a 4.3-fold greater abundance of BmpA compared to that of BmpB. These studies identify a transcription termination mechanism in B. burgdorferi resulting in the disparate expression of the two genes of the bmpAB operon.Paralogous bmp gene family 36 of Borrelia burgdorferi encodes four putative lipoproteins: BmpA (P39), BmpB, BmpC, and BmpD. The corresponding genes are confined to a single locus on the linear chromosome of this organism in the following 5Ј33Ј gene order: bmpD-bmpC-bmpA-bmpB (2,15,33,43). The paralogs share a high degree of homology at both the DNA (56 to 64%) and protein (36 to 46% identity) levels (2,15,33,37,43). Although the function of none of these proteins has been established, the conservation of their genes within the B. burgdorferi sensu lato complex (2,16,33,37,43) and the presence of orthologs in Treponema pallidum (41) and numerous other bacteria (B. burgdorferi genome web site at the Institute for Genomic Research) suggest that these proteins fulfill an essential physiological role.All four paralogs are transcribed in cultured spirochetes (5,11,33,34,35). Whereas the transcription of bmpA, bmpB, and bmpD has been demonstrated by both Northern blotting (33, 34) and reverse transcription (RT-PCR) (11), the very lowlevel expression of bmpC mRNA could be ascertained only by RT-PCR (11). However, thus far, only the expression of BmpA and BmpD proteins in vitro has been demonstrated (33, 42). The expression of these genes at the RNA level was also examined as a function of culture temperature and pH (11,35). In one study, the expression of bmpC and bmpD was found to decrease by 6-and 2.5-fold, respectively, at 37°C and pH 6.8 compared to the expression level at 23°C and pH 7.5 (35). In a different study, there was no difference in the expression of the four genes in spirochetes cultured at 23, 32, and 37°C (11). The expression of these genes in vivo was recently examined by microarray analysis (21). In mice infected with B. burgdorferi, bmpB, bmpC, and bm...