The study of basic cell ultrastructure and intracellular physiological functions has been greatly aided by detection and identification of single macromolecules. Since the current in situ labeling methods for directly correlative (light and electron) microscopy observations have a number of substantial limitations, the semiconductor nanocrystals quantum dots gain distinguished with long-term imaging and high photostability. The quantum dots (Qdots) have quickly filled in the role, being found to be superior to traditional organic dyes on several counts. It has been estimated that Qdots are 20 times brighter and 100 times more stable than traditional fluorescent reporters. Nowadays, a wide variety of quantum dots conjugated to secondary antibodies suitable for multiple labeling have become commercially available. They make possible the study of biological processes, both in the membrane or in the cytoplasm, at a truly molecular scale and with high spatial and temporal resolutions. By applying Qdots with different size and color light we might achieve multiple labeling of proteins. However, the use of particles with different size is problematic for high-resolution imaging, semi-quantitative measurement of epitope numbers, or when epitope density is high. Recently we report new electron microscopy method for immunolabeling, where two approaches are performed to distinguish yet unattainable spatial