The glomerular capillary tuft is a highly specialized microcapillary that is dedicated to function as a sophisticated molecular sieve. The glomerulus filter has a unique molecular composition, and several essential glomerular proteins are expressed in the kidney exclusively by glomerular podocytes. A catalog of >300 glomerulus-upregulated transcripts that were identified using expressed sequence tag profiling and microarray analysis was published recently. This study characterized the expression profile of five glomerulus-upregulated transcripts/proteins (ehd3, dendrin, sh2d4a, plekhh2, and 2310066E14Rik) in detail. The expression pattern of these novel glomerular transcripts in various mouse tissues was studied using reverse transcriptase-PCR, Northern blotting, and in situ hybridization. For studying the distribution of corresponding proteins, polyclonal antibodies were raised against the gene products, and Western blotting, immunofluorescence, and immunoelectron microscopic analyses were performed. Remarkably, it was discovered that all five transcripts/proteins were expressed in the kidney exclusively by glomerular cells. Ehd3 was expressed only by glomerular endothelial cells. Importantly, ehd3 is the first gene ever shown to be expressed exclusively by glomerular endothelial cells and not by other endothelial cells in the kidney. Dendrin, sh2d4a, plekhh2, and 2310066E14Rik, however, were transcribed solely by podocytes. With the use of polyclonal antibodies, dendrin, sh2d4a, and plekhh2 proteins were localized to the slit diaphragm and the foot process, whereas 2310066E14Rik protein was localized to the podocyte major processes and cell body. This study provides fresh insights into glomerular biology and uncovers new possibilities to explore the role of these novel proteins in the glomerular physiology and pathology. T he glomerular capillary tuft of the kidney is a unique micro-organ that is specialized to operate as a sophisticated molecular sieve (1). The filtration barrier is composed of the glomerular endothelial cells (GEC), the glomerular basement membrane (GBM), and the podocyte cells. GEC differ from most other endothelial cells in that they are extraordinarily flattened and fenestrated (2). The fenestrated structure of GEC depends on podocyte-derived vascular endothelial growth factor A (3), but the mechanisms behind their unique structure largely are unknown. The GBM, like all basement membranes (BM), is composed of interconnected collagen type IV and laminin networks, where proteoglycans and other matrix components are attached. The GBM, however, is distinct from most other BM of the body, because it contains a unique composition of collagen type IV and laminin isoforms. The importance of these components is highlighted by the fact that defects in GBM-specific type IV collagen or laminin lead to Alport syndrome and Pierson syndrome, respectively (4 -6).The podocyte foot processes and the slit diaphragm serve as a final filtration barrier in the glomerulus. This filtration machinery contains a n...