The widespread nanostructures of iron oxides and oxyhydroxides are important reagents in many biogeochemical processes in many parts of our planet and ecosystem. Their functions in various aspects are closely related to their shapes, sizes, and thermodynamic surroundings, and there is much that we can learn from these natural relationships. This review covers these subjects of several phases (ferrihydrite, goethite, hematite, magnetite, maghemite, lepidocrocite, akaganéite and schwertmannite) commonly found in water, soils and sediments. Due to surface passivation by ubiquitous water in aquatic and most terrestrial environments, the difference in formation energies of bulk phases can decrease substantially or change signs at the nanoscale because of the disproportionate surface effects.Phase transformations and the relative abundance are sensitive to changes in environmental conditions.Each of these phases (except maghemite) displays characteristic morphologies, while maghemite appears frequently to inherit the precursor's morphology. We will see how an understanding of naturally occurring iron oxide nanostructures can provide useful insight for the production of synthetic iron oxide nanoparticles in technological settings.