The activity of malate synthase (MS) (EC 4.13.2) appears and increases during cotton (Gossypium hirsutum L.) seed maturation, persists through desiccation and imbibition, then increases again following germination. The research reported herein is a comparative study of the synthesis and acquisition of MS into glyoxysomes as they occur in maturing and germinated seeds. Rate-zonal centrifugation of cotyledon extmcts revealed that the 5 Svedberg unit (S) been interested in the biogenesis of glyoxysomes during seed maturation and seedling growth for a number ofyears, especially in cotton seeds (Kunce et al. 21, and references therein). In this report, we focus on the biogenesis of MS, making comparisons ofevents occurring in maturing and germinated seeds. This study is facilitated by our capability to culture cottonseed embryos in the presence of ABA. Under these conditions, normal enzyme development occurs while germination is prevented; this is important because one can examine biogenesis events in immature seeds without the complications and potential misinterpretations related to germination and growth which do not occur during seed maturation.Centrifugation of germinated seed homogenates on Tricineor Tris-buffered sucrose gradients revealed the presence of three separable fractions of MS, i.e. soluble, and glyoxysomal (14,15,17,19). Rate-zonal centrifugation of these fractions from cucumber seeds revealed that the soluble and glyoxysomal fractions consisted of both 5S monomeric and 19S octameric forms, with the 5S being the predominant form in the cytosol, and the 19S predominant in the glyoxysomes (19). Work with castor bean endosperm produced apparent conflicting results. In one study (10), the glyoxysomal form was characterized as a 5S form, while others (2) reported it was a 20S form. These apparent discrepancies can be resolved, however, when one considers the different methodology used to produce these data (see "Discussion"). The ER-associated MS in castor bean and cucumber fractions was characterized as an aggregate (10, 19). Gonzilez (10) states that the aggregate was localized within the ER vesicles and therefore should be considered in the scheme of MS biogenesis. Kindl's group (12,13,19,20), however, reported that the 5S monomer was the precursor to the 19S octamer, and that the MS aggregate was outside the ER simply exhibiting sedimentation behavior on gradients similar to ER vesicles. Therefore, ER in their view, did not have a bearing on the biosynthesis of glyoxysomal MS. Only one study (with cucumber seeds) has been conducted on the radiolabeling of MS relative to its biogenesis during seed maturation (7