Turner syndrome is characterized by short stature, gonadal dysgenesis and a variety of somatic features and major organ malformations. About 50% of the patients have a 45,X karyotype, while the remainder have structurally abnormal sex chromosomes or mosaicism including mos 45,X/46XY. Those with Y chromosomal material are at increased risk for developing gonadoblastoma or dys germinoma later in life. The SRY gene on Yp has a major role in sexual differentiation, being the primary testicular determinant. Detection of the SRY gene in Turner syndrome patients has important clinical and therapeutic implications.We performed a genetic study of 40 Turner syndrome patients for cytogenetics (G banding) and polymerase chain reaction (PCR) for the SRY gene using XES7/XES2 and SRY 1F/SRY 2R primer sets. Cytogenetics identified a 45,X karyotype in 50%, isochromosomes in 25%, proximal long or short arm deletions and markers in 7.5% and mos 45,X/46XY in 5% of the patients. The SRY gene was detected in blood leucocytes of only two of the patients with the mos 45,X/46XY karyotype. Our low incidence of SRY-gene positive results in Turner syndrome patients contrasts with reported studies using more sensitive techniques that have detected a higher percentage. The increased risk of gonadoblastoma and the necessity of timely referral for gonadectomy require that analysis of the SRY gene should be offered to all Turner syndrome patients.