This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter fece, \^e others may be from any type of computer printer.The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction.In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion.Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper lefr-hand comer and continuing from lefl to right in equal sections with small overlaps. Each original is also photographed in one exposure and is included in reduced form at the back of the book.Photographs included in the original manuscript have been reproduced xerographically in this copy. Higher quality 6" x 9" black and white photographic prints are available for any photographs or illustrations appearing in this copy for an additional charge. Contact UMI directly to order. The original objective of this research was to generate a phylogeny of Gossypium based on markers from the biparentally-inherited nuclear genome, and to compare this phylogeny to that based on the maternallyinherited chloroplast genome (Wendel and Albert 1992). As work progressed, a new question arose as to the monophyly of Gossypinm. Therefore, more samples from species other than Gossypium had to be included. As a result, representatives from all but one genus in the tribe Gossypieae, to which Gossypium belongs, were included in the study. Although the taxonomic framework of the tribe Gossypieae had been laid out by previous authors (Alefeld 1861;Dumont 1887; Reeve 1936;Fryxell 1968 Fryxell , 1979, no formal phylogenetic inferences were made regarding relationships among members of this tribe (but see La Duke and Doebley 1995). Accordingly, phylogenetic investigation of the tribe Gossjrpieae as well as of Gossypium was conducted using molecular data from both chloroplast and nuclear genomes. Since the study employed multiple data sets, guidelines for data analyses were evaluated (e.g., Mason-Gamer and Kellogg 1996) and a new protocol was suggested .
UMIThe other aspect of the work presented in this dissertation is the study of the recently described Gossypium sect. GrandicoJtyx (Fryxell et al. 1992), from NW Australia. Recent expeditions to that region have provided a wealth of plant materials for studying this unique group of plants (Fryxell et al. 1992). The study described in this dissertation included broader sampling and employed more data than in previous studies (Wendel and Albert 1992;.To sum up. the primary objectives of this dissertation were: 1.To test the monophyly of the tribe Gossyp...