Riemerella anatipestifer is a well-described pathogen of waterfowl and other avian species that can cause septicemic and exudative diseases. In this study, we sequenced the complete genome of R. anatipestifer strain Yb2 and analyzed it against the published genomic sequences of R. anatipestifer strains DSM15868, RA-GD, RA-CH-1, and RA-CH-2. The Yb2 genome contains one circular chromosome of 2,184,066 bp with a 35.73% GC content and no plasmid. The genome has 2,021 open reading frames that occupy 90.88% of the genome. A comparative genomic analysis revealed that genome organization is highly conserved among R. anatipestifer strains, except for four inversions of a sequence segment in Yb2. A phylogenetic analysis found that the closest neighbor of Yb2 is RA-GD. Furthermore, we constructed a library of 3,175 mutants by random transposon mutagenesis, and 100 mutants exhibiting more than 100-fold-attenuated virulence were obtained by animal screening experiments. Southern blot analysis and genetic characterization of the mutants led to the identification of 49 virulence genes. Of these, 25 encode cytoplasmic proteins, 6 encode cytoplasmic membrane proteins, 4 encode outer membrane proteins, and the subcellular localization of the remaining 14 gene products is unknown. The functional classification of orthologous-group clusters revealed that 16 genes are associated with metabolism, 6 are associated with cellular processing and signaling, and 4 are associated with information storage and processing. The functions of the other 23 genes are poorly characterized or unknown. This genome-wide study identified genes important to the virulence of R. anatipestifer.
Riemerella anatipestifer is a Gram-negative, non-spore-forming, nonmotile, capsule-like, rod-shaped bacterium. It is reported worldwide as the cause of epizootic infectious polyserositis in domestic ducks (1); it is also pathogenic for geese, turkeys, chickens, and other birds (2, 3). R. anatipestifer infection occurs in acute form in ducks less than about 8 weeks of age and in chronic form in older birds. It causes major economic losses in the duck industry by causing a high mortality rate, poor feed conversion, increased condemnations, and high treatment costs (4, 5).Currently, 21 serotypes of R. anatipestifer have been identified by slide and tube agglutination tests using antisera (6). There is a large variation in virulence between different serotypes and strains, as assessed by mortality and morbidity rates (7). Infections with R. anatipestifer serotypes 1, 2, 3,5,6,7,8,10,11,13,14, and 15 have been reported in China, with serotypes 1, 2, and 10 being responsible for most of the major outbreaks (8). There is very little knowledge about the molecular bases of R. anatipestifer virulence, except for the virulence factors VapD, the Christie-AtkinsMunch-Peterson (CAMP) cohemolysin, and OmpA. VapD shows homology to virulence-associated proteins in other bacteria (9). The CAMP cohemolysin is a sialoglycoprotease produced during natural infection under certain intrace...