Autonomous relative navigation is a critical functionality which needs to be developed to enable safe maneuvers of a servicing spacecraft (chaser) in close-proximity with respect to an uncooperative space target, in the frame of future On-Orbit Servicing or Active Debris Removal missions. Due to the uncooperative nature of the target, in these scenarios, relative navigation is carried out exploiting active or passive Electro-Optical sensors mounted on board the chaser. The focus here is placed on active systems, e.g., LIDARs. In this paper, an original loosely-coupled relative navigation architecture which integrates pose determination algorithms designed to process raw LIDAR data (i.e., 3D point clouds) within a Kalman filtering scheme is presented. Pose determination algorithms play a twofold role being used to initialize the filter state and covariance as well as in the update phase of the Kalman filter. The proposed filtering scheme is an Unscented Kalman Filter designed to use, as measurements for the update phase, relative position, attitude and angular velocity estimates. Performance assessment is carried out within a simulation environment realistically reproducing the operation of a scanning LIDAR and the relative motion between two spacecraft during a target monitoring maneuver. The numerical simulation campaign demonstrates robustness of the proposed approach even when dealing with challenging conditions (e.g., low range measurement accuracy, low update rate and high point-cloud sparseness) determined by the LIDAR noise level and operational parameters.