In this paper, we devise a discrete time SIR model depicting the spread of infectious diseases in various geographical regions that are connected by any kind of anthropological movement, which suggests disease-affected people can propagate the disease from one region to another via travel. In fact, health policy-makers could manage the problem of the regional spread of an epidemic, by organizing many vaccination campaigns, or by suggesting other defensive strategies such as blocking movement of people coming from borders of regions at high-risk of infection and entering very controlled regions or with insignificant infection rate. Further, we introduce in the discrete SIR systems, two control variables which represent the effectiveness rates of vaccination and travel-blocking operation. We focus in our study to control the outbreaks of an epidemic that affects a hypothetical population belonging to a specific region. Firstly, we analyze the epidemic model when the control strategy is based on the vaccination control only, and secondly, when the travel-blocking control is added. The multi-points boundary value problems, associated to the opti-This work is supported by the Systems Theory Network (Réseau Théorie des Systèmes), and Hassan II Academy of Sciences and Technologies-Morocco.